G156217


Basic Information

Item Value
gene id G156217
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10263990 ~ 10346054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231342
TGTTAATTTTTATACCCTCAGTCTCTATAAATAGTACGGTTACTTCCTTGTGTTCAAGCATATCAGCATGCTCCCACAAAATCTAACCCTGATCTCCTTGTTCATTTTACTGTGTCGACAAGgtgTTGACACAAAAAGGTACTTCACATGTGAAGGTGGCTCTGTTCCACTCAGCTGTGATTGGGGATACATAAAGGTGGTTACAGCCAATTATGGGCGAACCGACCACACAACGTGCTCCACTGGAAGATCACTTCATCAGCTCTCGAACGTCGACTGCTTCCACAAGACATCCCTCCATGTGATGTCCAAACGatGTGATGGAAGAAAGAGCTGTTCTGTTCCCGAGTTCACTGCGGGAACAGAACAGCTCTTTCTTCCATCACatctatataaacacacacacgaaaaaACGTTTTGAGAGGAACTGCAGTTGCATCTACTGTTTAATGCAGTGCTGATGTTTCGTTTCCTCTTAAAGAAGCGGTTACCGTTTGGACATCACATGGAGGGATGTCTTGTGGAAGCAGTCGACGTTCGAGAGCTGATGAAGTGATCTTCCAGTGGAGCACGTTGTGTGGTCGGTTCGCCCATAATTGGCTGTAACCACCTTTATGTATCCCCAATCTGACACGTCAAACAACTTGTCATAAGAATCATTGTGAATTgtaacagagtgtgtgtgaaccGAGTGTGGTTACTCACCACAGCTGAGTGGAACAGAGCCACCTTCACATGTGAAGTACCTTTTTGTGTCAAcacctggagagagagagagagagagagaggggctgTTTAGGATGAAGTGAAGTACAGCTACTTGTAGCATTGTTTTAGGGATTGTTTTAGGGACAGTGTTCCAACCATACCGGACTTACAAAGACACCTAACAGCTAAACGTGTAAGCGCTGCTTGCTTTATACAAGCGATCACATGATTTGCCCTAATACGCTTTATCGACGCGAACTGATAGATGAAACACCAAACGCTCCATAAACAAAGCGTTACTTGTTAGACTACAGAAGAATACCGCCGTTTCTCCGTTTATTTAGCCAAGTGTTTTCACGCCAGAGTGTGCGAAACCGATACTCGCGGCACTCGCGCGAAGAAAAACACAGCGCGACCAGCCATGCTTGGAGATAACTACTGTTTTGTGCCTGTTGCGAAAGTAtcaaaaatgatgaaaagcCCAACGACGACAGGTCTGGGTTCACAGCACCATCCAGgtctataaaaaaaacctgaggAGCGCTTGAATGCAGCGTTAGCGCTTGGATCAACGGCCTCCTTCGTTTGTGCTTCGCTACGAATCTTCGAGTGAACGTGTTTTTTATGGCTCTGACTGACATGCTACTAAACGTGAGTGAAATTTGCACACCTTGATGAGCGCGTACAGTTATCTTCATTGAAGTGAATGAGGTTTCAATCGTGCgtgcatgaatgaatgatatTTTTGCAATTGTACACCTAATAATCTACAACGATCACACATTGCACAAAACTGAAAACGCATGTCAAACAAAGacgttaaaaatattttcttccgCCAAATTTCATAAATTGCTATTTAGGGGGAGCAAATGTCTTATTAAGAGGAGAGGAGCTCCTCTGTAGTTTGCACATTGggttttggttttaaatgtattacaggCTGCATTTTTAGCAAAACAACTCGGTAAGGCCTTACCTTGTCGACACAGTAAAATGAACACTGCAAAatcaaagagaaaacattttaaacatctgtATATAACACTTTCAAATAATTCTTAATGTAagttatttgaatatataaaagaaagaaacttacAGGAGATCAGGGTTAGATTTTGTGGGAGCATGCTGATATGCTTGAACACAAGGAAGTAACCGTACTATTTATAGAGACTGAG

Function

GO:

id name namespace
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0005215 transporter activity molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU231342 True 1892 lncRNA 0.42 6 10263990 10346054

Neighbor

gene id symbol gene type direction distance location
LOC122329223 NA coding upstream 6762 10247911 ~ 10257228 (+)
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding upstream 20149 10240311 ~ 10243841 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding upstream 46389 10212843 ~ 10217601 (+)
zgc:56699 zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049 coding upstream 139779 10121748 ~ 10124211 (+)
cd63 LOC107723742,LOC107671882,LOC107572785,LOC107701749,LOC107756350,LOC107549048 coding upstream 147034 10108293 ~ 10116956 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding downstream 22399 10368453 ~ 10381390 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 83223 10429277 ~ 10432503 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding downstream 101754 10447808 ~ 10449331 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 209222 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 300909 10646963 ~ 10658747 (+)
LOC122328771 NA non-coding upstream 7584 10254786 ~ 10256406 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 100014 10161998 ~ 10163976 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding upstream 118529 10134855 ~ 10145461 (+)
G156142 NA non-coding upstream 269337 9994446 ~ 9994653 (+)
G156108 sgk1 non-coding upstream 340765 9922141 ~ 9923225 (+)
G156169 NA non-coding downstream 40906 10386960 ~ 10387500 (+)
G156171 NA non-coding downstream 41814 10387868 ~ 10388626 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 174088 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 227160 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 320807 10666861 ~ 10674148 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 174172 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 494370 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1141597 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1162618 8941031 ~ 9101372 (+)
G155799 NA other upstream 1775349 8488086 ~ 8488641 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 69609 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 168925 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 205043 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 217290 10563344 ~ 10572246 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 352744 10698798 ~ 10700895 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G13106 NA misc NC_053113.1 CM020910.1 309204 ~ 363950 (+)
eurasian perch (Perca fluviatilis) G148113 NA non-coding NC_053125.1 CM020922.1 32817145 ~ 32818859 (+)
striped catfish (Pangasianodon hypophthalmus) G169119 NA unknown NC_047604.1 CM018550.1 20564929 ~ 20565799 (-)
mexican tetra (Astyanax mexicanus) G12992 NA non-coding NC_035898.1 CM008301.1 23384132 ~ 23385347 (+)