G157408 (her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052)


Basic Information

Item Value
gene id G157408
gene name her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13411670 ~ 13495376 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233085
tttttttttttttttTTTcgttattttgatttattcagcATCAGACATAAAACActtatgaaaaaacaacaagaaagcTTTGGCATAATACAATCTTTTACAAACTTTGTACAAAActaaattcttttatttaaaagtactttATAAACATTAAGTGTTACGCCGTCGAATTAACAACGGCACCTTCATTAACGACATCCAAATATTGGAATCAGCTAATAAACATACGCCTCGTCCAACAGAAGGTCAACAAAGTCCCTTAAAACGGAACCGAACGTATTTTCTTCATCGtgaaaaactgctttaaaagttCGCACGGGACGAGCAGGTCTACCAAGGTCTCCACACCGGTTCATTGCTCTCCGCTCCGGCGCTAACGCCGACGGGACTGACGGCCTGTGAAACGCCCGCGAAGGAGGTCATTCCCTGCACCGGAGATGCGACCGTGGGAGCCGAGCTGGCCTGGACGGGGCTGGCGTTGACTGTCACCGGGACGCTTGCGTTTGCGTACAAGGGAATTACCGGAGTGGTAGCAGAGGCGAAAGCTGGGTTGGGGATAAGAAAAGCAAACTGTCCGTCGGTGGCTGGCACCAGCTGGAATCCTCCAAAGACTTTGGGAGACACCGCTTCTGAGGGACTGAGTTTGGGGCCCATCGAGGCGCTGTTGATGGGCAGCGTCGAAGGAAGCTGCACGTGAAGAGGCTGAGCCAGATGCGCCTGTTGAGCTGGGGCGGGCTGAGGGTAGTTCATGGCCATCATTtgtcccaagcaacccgacagGTGGTTGAGAAGTCTCGACCTAACCTCCGTATTCACTCCCTCGCAAGTAGAGAGGAACCGAGTCACCTCGTTCATGCACTCGTTGAATCCGGCGCGATACTTGCTGAGGACGTTTGTGTCCGCTGACAGGGC
>TU233089
ttattttgatttattcagcATCAGACATAAAACActtatgaaaaaacaacaagaaagcTTTGGCATAATACAATCTTTTACAAACTTTGTACAAAActaaattcttttatttaaaagtactttATAAACATTAAGTGTTACGCCGTCGAATTAACAACGGCACCTTCATTAACGACATCCAAATATTGGAATCAGCTAATAAACATACGCCTCGTCCAACAGAAGGTCAACAAAGTCCCTTAAAACGGAACCGAACGTATTTTCTTCATCGtgaaaaactgctttaaaagttCGCACGGGACGAGCAGGTCTACCAAGGTCTCCACACCGGTTCATTGCTCTCCGCTCCGGCGCTAACGCCGACGGGACTGACGGCCTGTGAAACGCCCGCGAAGGAGGTCATTCCCTGCACCGGAGATGCGACCGTGGGAGCCGAGCTGGCCTGGACGGGGCTGGCGTTGACTGTCACCGGGACGCTTGCGTTTGCGTACAAGGGAATTACCGGAGTGGTAGCAGAGGCGAAAGCTGGGTTGGGGATAAGAAAAGCAAACTGTCCGTCGGTGGCTGGCACCAGCTGGAATCCTCCAAAGACTTTGGGAGACACCGCTTCTGAGGGACTGAGTTTGGGGCCCATCGAGGCGCTGTTGATGGGCAGCGTCGAAGGAAGCTGCACGTGAAGAGGCTGAGCCAGATGCGCCTGTTGAGCTGGGGCGGGCTGAGGGTAGTTCATGGCCATCATTtgtcccaagcaacccgacagGTGGTTGAGAAGTCTCGACCTAACCTCCGTATTCACTCCCTCGCAAGTAGAGAGGAACCGAGTCACCTCGTTCATGCACTCGTTGAATCCGGCGCGATACTTGCTGAGGACGTTTGTGTCCGCTGACAGGGCCGCTGCAAAGCAAAGGGAAGCTCCATTAACGCCGTGCGTTTGGGACATTAAACAACGCGCTCAAATCTTACGCCAGGAGTCACGCATTTGAATAAACGTGACGCGACTTACCAGTCATCTGAACACGCTGCAAATTGCGCAGGTGTTTGACAGTCATCTCGAGAATATCAGCTTTCTCCAATTTAGAGTGTCTGGAGCTCTTTTTTTAAGAGCATCGAGAATGAGGGTCTTCAGCTGTCCGAGGCTCTCGTTTATTCTCGCTCTGCGGCGTTTCTCCATGATCGGCTTTGAAGACTGCAGATGAAACGCGAAgacaattaatttctttaataaagaCGCTACTTCAAACAACTTTAAAGTTAGAAAGGGCACCTGACGTTCATCTAAAACGAAACCCGAACGCGAGAAAAGTGCCAAAACCACTAAAGCGACATTTACCTTTCTGTGCTCGCTGGCGTTCTTTGGTTTGTCCGGAGTATGAGATCCACTGGCAGGGGCACCAGCAATAGGTGATGCGGTCTGCTTCTCCATGTTGTCGGCTGGCATGATCAAAAACCAAATCTGGGTCCGGTATAAGccaagaaaaatgtttatattccgTGCGcggctttttaaaaacacagagacGGGCTGTCGGGATTAGATGCGGAGCGCGGCCAAGATCTCGGGATGGTCACGAGAGAGAGTGCGAGTCCCTCTTATCAGCTATATGACTTATAGTCGGCAGGCTGTCATGTGAGGACACGAGCGTGTGCGGCGTAGCGCTTCAGAGGGCAAGTCGAATCTCC

Function

symbol description
her9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of neurogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; neural plate; presumptive hypochord; and pronephros. Orthologous to human HES4 (hes family bHLH transcription factor 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233085 False 912 lncRNA 0.50 2 13411670 13494477
TU233089 True 1680 lncRNA 0.50 2 13493586 13495376

Neighbor

gene id symbol gene type direction distance location
samd11 samd11,LOC107593364,LOC107716107,LOC107687414,LOC107737557 coding upstream 35369 13321531 ~ 13376301 (+)
rerea rerea,LOC107737560,LOC107703059,LOC107591099,LOC107593365,LOC107687412 coding upstream 126796 13147705 ~ 13284874 (+)
eno1a eno1a,eno1,LOC107703060,LOC107591100,LOC107716106,LOC107737561,LOC107593367,LOC108434336,LOC103038459,LOC103151087 coding upstream 269702 13132017 ~ 13141968 (+)
LOC122329098 slc2a5 coding upstream 288110 13116993 ~ 13123560 (+)
gpr157 gpr157,LOC107737701,LOC107703047,LOC107591148,LOC107687411,LOC107716105,LOC107593368 coding upstream 298641 13109054 ~ 13113029 (+)
agrn agrn,LOC107591095,LOC107673061,LOC107593945,LOC107737670,LOC107716114 coding downstream 43577 13538953 ~ 13747172 (+)
ptpn11b ptpn11b,LOC107591094,LOC107737552,LOC107593936,LOC107673095,LOC107687422,LOC107716115 coding downstream 256370 13751746 ~ 13778674 (+)
ttll10 LOC107591093,LOC107716116,LOC107593935,LOC107687423 coding downstream 308738 13804114 ~ 13824537 (+)
LOC122328345 LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944 coding downstream 329583 13824959 ~ 13831445 (+)
clcnk clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941 coding downstream 409712 13905088 ~ 13911750 (+)
G157329 NA non-coding upstream 296496 13114958 ~ 13115174 (+)
G157326 NA non-coding upstream 304713 13106460 ~ 13106957 (+)
G157317 NA non-coding upstream 371258 12989801 ~ 13040412 (+)
G157294 NA non-coding upstream 557838 12853241 ~ 12853832 (+)
G157265 NA non-coding upstream 623955 12729044 ~ 12787715 (+)
G157417 NA non-coding downstream 306044 13801420 ~ 13882959 (+)
G157423 LOC106566923 non-coding downstream 363589 13858965 ~ 13862206 (+)
G157459 NA non-coding downstream 402455 13897831 ~ 13901092 (+)
G157446 epha2b,epha2,LOC107737541,LOC107591085,LOC107716125,LOC107687430,LOC107593930,LOC102306962,LOC102194419 non-coding downstream 443067 13938443 ~ 13939354 (+)
G157471 epha2 non-coding downstream 444030 13939406 ~ 13939898 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1159688 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 1665100 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 1679309 11730980 ~ 11732361 (+)
G156586 NA other upstream 2234637 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 2326066 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 598702 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 804325 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 1108417 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 1114153 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 1185484 14680860 ~ 14686618 (+)

Expression


Co-expression Network