clcnk (clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941)


Basic Information

Item Value
gene id clcnk
gene name clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13905088 ~ 13911750 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225565.1
ATTCAGTGGCTGCCCAGAGGCAAGCTGGAGAGGACGTGCACCATAAATAAGTTAAAGCTTAATTTTCCTTTCAAGCTACATCTGGTAATGCCAGAGTTGATTCTGACCTCAACAGTCTTTCATGTGGAATGAGTCAACTGACTAAAAGAAAATGGATGAAACCTGTGTAAACGTAAAATGtcctgaagaaaatgaagaACAGTGCGCAGATGAAGATAAGATAGACCAAGATAAGGTGGAGGAAAAGCTAATCGGCTCTAATGTGCGTTCATGCAAACCATGGCAAGAGTCCCGCTCACGAATCAGAGAGTGTGCGCTGTATGTGAAGAAGGTCCTGGTGTCTTTTGCTAGCATGGAGTGGTACTGTTATGCCCTGTTAGGGATCATCACCGCTCTAATGAGCTTCTTCATGGATATGACAGTAGCCAAGCTGTTGAATGCTCACCAATGGCTATACGGCTGTCTGAAGGGTCACCACCTGCTGCAGTTCCTCTGCTGGACGCTTTACCCAGCTTGTCTTTGTGCTCTGTCCACCAGCTTTGCCCACAGCATCTGCCCATTCTCCGCAGGCTCTGGTGTTCCTGAGGCGAGGGCTATTCTCTTAGGCATGGACATGCCAGATTACCTGTCCCTCTCCAATCTCTTCGCTAAACAGTTTGGCCTGATATGCACACTAGCTTCGGGCAGCACAGTGTTTCTCGGCAAAGTGGGTCCATTTGTCCATTTATCTGTCATGGTGGGTGCGTTCATGAGTCGCCTGCATGTTTCCTGCCGTGGTGGAAAACAGAGAGCGGCTAAAGGGGAAATGTTGGTTGTGGCGTCAGCGGTGGGCGTCGCGAGCTGTTTTGGAGCTCCGGTCAGCGGTGTTCTGTTCAGTATAGAAGTGATGGGGACTCATTATTCAGTCAGAGATTATTGTCCCTGCTTCTTTGCAGCGGCCTGCGGCGCAGTCACCTTCAGACTGCTTTCTGTCTGCAACAGAGATCAAGAAACCATCCAGGCCCTGTTTAAAACCAGCTTTTCTTCTGATCTTCCCTACCAGccctttgaaatatttattttcgcTCTTCTTGGGCTGTTCTGCAGTATGctcagctgcatttatttattctgtcatCGCTGGGCTCTGCGTtttgtcaaaacaaacaaacccatcAGCAGACTTCTGGCAACAGAAAAGTCTCTTTACTCAGCCATAGTGGCATTTCTCCTCGCCTGCTTTACGTTTTATCACTCGGCGGGACATTTCATAGCTGCTGAGCTCACAATGAAGCAGCTGCTTACTTCACTGTTAGACGGCACTTCCTGGTACActgtttcccagaatgcatctgCCCTGCCTGAACCTCAGAAAACATTCTGGCAGGCTTGGAACCCACCTGGCAAGAGCTACTTCCAAACACTAGGATTTTTCATTACTGCAAAGGTTGGGCTGTTGGTTGTGGCTTGTACCTTGCCTTTACCTGCGGGCTATTTCATGCCAGTATTTGTTTACGGTGCTGCAGTGGGCCGTTTGGTAGGCGAGGCCTCAGCCTATTTGCTCTCAGATGGAATCTCATCAACAAAGAGTTTGATAAACCCGGGCGGCTATGCGCTAGCAGGAGCAGCTGCGTTCTCTGGGGCTGtgacacacacgctctctcctGCTCTGCTGGCTCTGGAAATGACCGGTCAGTGCTCTCACGCCGTCCCCGCTCTGGTTGCCACGCTGGTATCCAACGCGGTGGCTCGTGCGAAGCACCGTCCATCTTTCTACGACGGCATATCCCTTATTAAACAGCTCCCGCACTTGCCATCTCTCATCCGGGCTTGTCCAAAGTTGGCCAGTGTTCAGATCAAGCAGTTTGTGATCCAAGCAGGAGTTGTTCTGGAGAGGACAGAGACACTGGCGAGTCTGAAGCACATGCTAAACGACAGCGCAGACAATGTATTTCCTGTGGTGGATTCTCATGACTCCTCTATTTTCCTGGGTACAATCAACAAATCACAGCTGCAGGAGTGTCTGCGTCAGCATAGAAATGAGGGTTTATGTAAACAGTTAGAGGAAGTATGCGCTATTCAACCTGTTCGGCTACATCTGACTCCTGAAAGCACTGTAAAGCAGGCTCATTGCATCATGAGTGTCACGGGTGAGCAGCGTCTGTTTATAACGGAGAGTGGGCGGCTGTGTGGCGTCATCACATGGAAAGAGatgaagaaaATAATCGAAGAGATGGCGAAGGAAGTCTGATGCACGGACCGTTAGCTCTGGCATCAGAACCACACAGCTAGCCATTTTGATAATCAGTTCATCTGCTGGTGATTTTGCTCAGATCATTATGTGGATAATTATTTAtagtgaaataataaataaatgatttgaacTGAA

Function

symbol description
clcnk Enables chloride transmembrane transporter activity. Involved in chloride ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in renal system. Human ortholog(s) of this gene implicated in Bartter disease type 3; Bartter disease type 4b; Gitelman syndrome; hypertension; and sensorineural hearing loss. Orthologous to human CLCNKA (chloride voltage-gated channel Ka) and CLCNKB (chloride voltage-gated channel Kb).

NR:

description
chloride channel protein ClC-Kb-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05017 CLCNKA; chloride channel Ka

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225565.1 True 2368 mRNA 0.49 20 13905088 13911750

Neighbor

gene id symbol gene type direction distance location
LOC122328345 LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944 coding upstream 73643 13824959 ~ 13831445 (+)
ttll10 LOC107591093,LOC107716116,LOC107593935,LOC107687423 coding upstream 80551 13804114 ~ 13824537 (+)
ptpn11b ptpn11b,LOC107591094,LOC107737552,LOC107593936,LOC107673095,LOC107687422,LOC107716115 coding upstream 126414 13751746 ~ 13778674 (+)
agrn agrn,LOC107591095,LOC107673061,LOC107593945,LOC107737670,LOC107716114 coding upstream 157916 13538953 ~ 13747172 (+)
plekhn1 plekhn1,LOC107737554,LOC107703054,LOC107716110,LOC107687418 coding upstream 469221 13422930 ~ 13435867 (+)
szrd1 szrd1,LOC107673108,LOC107716129,LOC107687433,LOC107737539,LOC107591082 coding downstream 96470 14008220 ~ 14012879 (+)
mlh3 LOC107673081,LOC107591079,LOC107737666,LOC107687437 coding downstream 133033 14044783 ~ 14050528 (+)
kansl2 kansl2,LOC107687436,LOC107716132,LOC107737532,LOC107591080,LOC107673082,LOC107593923 coding downstream 138941 14050691 ~ 14056567 (+)
LOC122329331 NA coding downstream 142614 14054364 ~ 14054500 (+)
LOC122329330 NA coding downstream 144935 14056685 ~ 14056821 (+)
G157459 NA non-coding upstream 3996 13897831 ~ 13901092 (+)
G157417 NA non-coding upstream 22129 13801420 ~ 13882959 (+)
G157423 LOC106566923 non-coding upstream 42882 13858965 ~ 13862206 (+)
G157408 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052 non-coding upstream 409712 13411670 ~ 13495376 (+)
G157410 LOC107737553,LOC107703053,LOC107591147,LOC107687419,LOC107716113 non-coding upstream 463137 13438275 ~ 13441951 (+)
G157446 epha2b,epha2,LOC107737541,LOC107591085,LOC107716125,LOC107687430,LOC107593930,LOC102306962,LOC102194419 non-coding downstream 26693 13938443 ~ 13939354 (+)
G157471 epha2 non-coding downstream 27656 13939406 ~ 13939898 (+)
G157472 NA non-coding downstream 28528 13940278 ~ 13940490 (+)
G157473 NA non-coding downstream 29116 13940866 ~ 13941487 (+)
G157474 NA non-coding downstream 30271 13942021 ~ 13942432 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1653106 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2158518 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2172727 11730980 ~ 11732361 (+)
G156586 NA other upstream 2728055 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 2819484 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 182328 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 387951 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 692043 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 697779 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 769110 14680860 ~ 14686618 (+)

Expression


Co-expression Network