G157966 (mef2d)


Basic Information

Item Value
gene id G157966
gene name mef2d
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14651424 ~ 14729662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233937
GAGCAAACAAATAAAGGACAAATGAGaccaacaaacaaactaaaaaaacttcCTGCCACCTGAAATTGAGGGGATTCATGGTGGGCTTGTATTTCTGTGTTACCTCGATGATGTCTGCGTTGGTCCTGCTTTCGTGCGGCTCATTGTACTCGGTGTATTTGAGGAGCACTTTGTCCATGTCGGTGCTGGCATACTGGAAGAGCTTGTTTGAGTGATTGAAAATAATGAGGGCAATCTCGCAGTCACACAACACACTGAGCTCATAAGCTTTCTTCATCAGACCAAACTTCCGTTTGGTGAAGGTCACCTTGGAGCATGA

Function

symbol description
mef2d Enables transcription cis-regulatory region binding activity. Acts upstream of or within heart formation; positive regulation of transcription by RNA polymerase II; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including adaxial cell; brain; fast muscle myoblast; musculature system; and primitive olfactory epithelium. Orthologous to human MEF2D (myocyte enhancer factor 2D).

NR:

description
PREDICTED: myocyte-specific enhancer factor 2D isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233937 True 319 lncRNA 0.45 2 14651424 14729662

Neighbor

gene id symbol gene type direction distance location
ada ada,LOC107574722,LOC107737507,LOC107673052,LOC107716171,LOC107564650,LOC107695842 coding downstream 15099 14624253 ~ 14636325 (-)
LOC122328465 LOC107737694,LOC107673066,LOC107568406,LOC107668342,LOC107564659,LOC107716177 coding downstream 81766 14564464 ~ 14569658 (-)
senp1 LOC107673065,LOC107568405,LOC107737512,LOC107716163 coding downstream 87624 14554814 ~ 14563800 (-)
lrp1ab lrp1,lrp1ab,LOC107673053,LOC107593902,LOC108425568 coding downstream 126788 14428972 ~ 14524636 (-)
idh3g idh3g,LOC107737522,LOC107591068,LOC107673097,LOC107716150,LOC107593912,LOC108425561 coding downstream 357858 14286961 ~ 14293566 (-)
LOC122328919 kcnn3,LOC107723559,LOC107657645,LOC107699550,LOC107714686,LOC107595057,LOC108280396 coding upstream 42429 14772091 ~ 14808777 (-)
LOC122328901 LOC107549209,LOC107689901,LOC107738870,LOC107681562 coding upstream 176174 14905836 ~ 14933006 (-)
LOC122328916 iqch coding upstream 319704 15049366 ~ 15073882 (-)
LOC122328908 smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260 coding upstream 348924 15078586 ~ 15092247 (-)
LOC122328567 LOC107668556,LOC107570149 coding upstream 465455 15195117 ~ 15197461 (-)
G157906 NA non-coding downstream 190407 14326384 ~ 14461017 (-)
G157928 NA non-coding downstream 207973 14383738 ~ 14443451 (-)
G157920 NA non-coding downstream 283795 14366559 ~ 14367629 (-)
G157915 LOC107673099,LOC107737518 non-coding downstream 292394 14357040 ~ 14359030 (-)
G157901 NA non-coding downstream 308154 14302872 ~ 14343270 (-)
LOC122328920 NA non-coding upstream 100602 14830264 ~ 14830849 (-)
G157999 itga8,LOC107689880,LOC107717802,LOC107681583 non-coding upstream 106699 14836361 ~ 14845678 (-)
LOC122328921 NA non-coding upstream 458486 15188148 ~ 15189638 (-)
G158014 NA non-coding upstream 472704 15202366 ~ 15203950 (-)
G157984 NA non-coding upstream 480566 15210228 ~ 15338843 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 61802 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 320640 14326966 ~ 14330784 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other downstream 418373 14222809 ~ 14233051 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 1369097 13280256 ~ 13282327 (-)
G157367 NA other downstream 1434016 13141078 ~ 13217408 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 317490 15047152 ~ 15048344 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other upstream 617755 15347417 ~ 15474390 (-)
LOC122329227 NA other upstream 892280 15621942 ~ 15717250 (-)
G158231 NA other upstream 1278444 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 1414171 16143833 ~ 16169834 (-)

Expression


Co-expression Network