G159048 (LOC107714930,LOC107664105,LOC107593987)


Basic Information

Item Value
gene id G159048
gene name LOC107714930,LOC107664105,LOC107593987
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18642262 ~ 18644688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU235489
TGTCAAGTTACTTAAAATACCATTCTACATTTGCAAGGCCTATTGAGTCAGGCCAGATATTAACAGTCAGTTGTTAACAGTCAGTTGTTAAACGGAATAAACAGACATCTAATCTTTGAACTAAAGTGACAGTGACACAAATTAAATACACCCACTTTGGGTGTGAATGCTTATTGTTCACCGTTTCCGCTGTTGCGCAACAATAGACAGAAGTGCTTGTTTTAAGCCATATCTTTTCATATCTCTGGGCCAGGTGCTACCCTCTGCATTCCGTAGCTGACAGGCTTGATGGCCTGCTTGGCATGAACATTTGTCTCTGTAAACAATACTGTATCCATAGATTCGTGTGCAAGAGGTTTTTCACgtaacatacaaaaataaaatgcaaaggaAATTCTTTTCTATTACAAAATCAAGTAACGTGATATATAGGTAGTAACACACATAACCAGGATTTAAGTACTGGCATGTACAAAAGGCTTAACCAAAACAGCTAAACCAATACAGCATTTTGAGGTCCTAAAACCAGCATGATAATTAGCCATTTTTCAACCATGTGTTCTCTTTGGAATTTCCTATGGGTTTTTAGAATGCCGGGTTTGGATTTATGAGTACAAGACGATCTGTACTTAGCATTCCCTTAAGAAATATTAATGTCAACATAAATTACAGATCAGCAAGCTGTAAAACAAGGACTAAAACTTCCATGAGGACATGTGTTTTTTGTCCTTATATAATAGCAATTTGTTACGCATGCTTTCAGGTGAGAGGTATAAATGTGTGTGGTTTATGTTGTACGGCAAAATCTCAAACACAGAATTACTCACAAACTTTAACTCACCATTCTAAAACCTCATAAGAAATTGGTGAATTAGCAGGTTGAATATGACCATAATGAACAAGTTAGCCAACTCGGTCAGGCAGGGAGCTTCTCTGATTGgctaaatactaaaatgtttaCAGAGTCAAGGGATCAGGTCACATGTGATCACATCCAATTGACATCTGCAAGATGCATTTGTGTTTGCTGCAATATGGCGTCTATCGGATGGCAAATAGATGTTTAaaagatgtctttaagatgttgaTGATTTAGAATGTATATGAATCTGACATCTTACGGATGTTCGTGCACAACAGACGCTTTCCAGATCACGCGATCTGTAACAGACGTCTTGCAGACGCACGTGTGCCATCTCGGGCTAACCAGGTCATTTTATGCGTGATACTGGGCAAACCGGGGCTTCTAACATGACCCAAGTTAATCCAGCTCTCGAAGAGTCTTCCCCGACTCCGCCGCATTTCTGCAGCTGTAAAGCCACTTGATGATCCGAGCGTTGCGCTCGACCACCGACGACCCCTGACGCACGGTCTCCTGCAGTTCCTCCTCGTGCGGGCCGTCGCTGCCCCTCGAGAACCCGTCATCCGAAGTCGAGACGCTGATGCTCCGGATTTTGGAGCCGGTGTCTTCGGAGCGCGCGGAGAAGTTCTCTCTGCCCAGCGACTCGACGACGTCGCCCTCGAGTCCGCAGTACTTGAAGAACGCGTCGAAGTCCGCGAAGTTTCTCGAGTAGCGCGAGCTGATGTCGGAGCTGGAGCGCGCCACCCCCTTGCGGCTCCTGCGGTCCTGCTCCTGGGTTTCGGCGACTTTCCTGTGCAGAGGTCCTTTCGGCTTTCCGTTCGTCTCGCCCGAGTGCCCGTTAGAGATGGTCAAAGTCACCTGAGCGGCCTTACGTGTGTCGCATTCGCCACCGCGCGCCGCTGAAAACGCGTTTGTCTTCTCTTTAAAGGCGAAGAGCGACTTTTTAATCAATCTCCTACTCCCGCCAGGCGATTCTCTTAAGAGTTCGCACTTTTGCCTGTATAGTAAAATGGAGTCTCGTTTCTTCGAGCTGCTCCGTCTCACCACATTAATTTCTTCTTCGGGCGACCGTGTATCCTCAACATCAACGCTGTTATTAACGGAACCGTGCCCGTTTGAAGACCCTTGGCTGCTCACGGAAGCAGACCCGTCGCTGATAGCTGGTTCCTGCGTGGAACCGACCACTTGTTGGCTTTTTACATATTGAGGTTTGGTGGCTGCCAACCTCTCCACCGCGCTGACGCGTCCTCTATTCGCCTCGCTTTCTCGCTCCATCTGTCTTCTCAAAAACTCGGGTCCCTTCACAAGAATGCGCGACGCGTCCACGTCGGCCGAGCCTTGCGTTTTCTTCAGCATTATACAGTTCGGACGAGTATTTCGTTTTACGTCCACGACGGCCGAGTTGCAAAACGTTTCGAGGGTTCCGATAGCGAGGAGAACGCACTGACGCACACCTTTACC
>TU235490
CTTAATAACagtaagaaaatgttttattgactgatacatatagtcatatatataaaatcattgcATAGCGTGTCAAGGTTGTTTGACACAAAAAGTACACGCTATGTCAAGTTACTTAAAATACCATTCTACATTTGCAAGGCCTATTGAGTCAGGCCAGATATTAACAGTCAGTTGTTAACAGTCAGTTGTTAAACGGAATAAACAGACATCTAATCTTTGAACTAAAGTGACAGTGACACAAATTAAATACACCCACTTTGGGTGTGAATGCTTATTGTTCACCGTTTCCGCTGTTGCGCAACAATAGACAGAAGTGCTTGTTTTAAGCCATATCTTTTCATATCTCTGGGCCAGGTGCTACCCTCTGCATTCCGTAGCTGACAGGCTTGATGGCCTGCTTGGCATGAACATTTGTCTCTGTAAACAATACTGTATCCATAGATTCGTGTGCAAGAGGTTTTTCACgtaacatacaaaaataaaatgcaaaggaAATTCTTTTCTATTACAAAATCAAGTAACGTGATATATAGGTAGTAACACACATAACCAGGATTTAAGTACTGGCATGTACAAAAGGCTTAACCAAAACAGCTAAACCAATACAGCATTTTGAGGTCCTAAAACCAGCATGATAATTAGCCATTTTTCAACCATGTGTTCTCTTTGGAATTTCCTATGGGTTTTTAGAATGCCGGGTTTGGATTTATGAGTACAAGACGATCTGTACTTAGCATTCCCTTAAGAAATATTAATGTCAACATAAATTACAGATCAGCAAGCTGTAAAACAAGGACTAAAACTTCCATGAGGACATGTGTTTTTTGTCCTTATATAATAGCAATTTGTTACGCATGCTTTCAGGTGAGAGGTATAAATGTGTGTGGTTTATGTTGTACGGCAAAATCTCAAACACAGAATTACTCACAAACTTTAACTCACCATTCTAAAACCTCATAAGAAATTGGTGAATTAGCAGGTTGAATATGACCATAATGAACAAGTTAGCCAACTCGGTCAGGCAGGGAGCTTCTCTGATTGgctaaatactaaaatgtttaCAGAGTCAAGGGATCAGGTCACATGTGATCACATCCAATTGACATCTGCAAGATGCATTTGTGTTTGCTGCAATATGGCGTCTATCGGATGGCAAATAGATGTTTAaaagatgtctttaagatgttgaTGATTTAGAATGTATATGAATCTGACATCTTACGGATGTTCGTGCACAACAGACGCTTTCCAGATCACGCGATCTGTAACAGACGTCTTGCAGACGCACGTGTGCCATCTCGGGCTAACCAGGTCATTTTATGCGTGATACTGGGCAAACCGGGGCTTCTAACATGACCCAAGTTAATCCAGCTCTCGAAGAGTCTTCCCCGACTCCGCCGCATTTCTGCAGCTGTAAAGCCACTTGATGATCCGAGCGTTGCGCTCGACCACCGACGACCCCTGACGCACGGTCTCCTGCAGTTCCTCCTCGTGCGGGCCGTCGCTGCCCCTCGAGAACCCGTCATCCGAAGTCGAGACGCTGATGCTCCGGATTTTGGAGCCGGTGTCTTCGGAGCGCGCGGAGAAGTTCTCTCTGCCCAGCGACTCGACGACGTCGCCCTCGAGTCCGCAGTACTTGAAGAACGCGTCGAAGTCCGCGAAGTTTCTCGAGTAGCGCGAGCTGATGTCGGAGCTGGAGCGCGCCACCCCCTTGCGGCTCCTGCGGTCCTGCTCCTGGGTTTCGGCGACTTTCCTGTGCAGAGGTCCTTTCGGCTTTCCGTTCGTCTCGCCCGAGTGCCCGTTAGAGATGGTCAAAGTCACCTGAGCGGCCTTACGTGTGTCGCATTCGCCACCGCGCGCCGCTGAAAACGCGTTTGTCTTCTCTTTAAAGGCGAAGAGCGACTTTTTAATCAATCTCCTACTCCCGCCAGGCGATTCTCTTAAGAGTTCGCACTTTTGCCTGTATAGTAAAATGGAGTCTCGTTTCTTCGAGCTGCTCCGTCTCACCACATTAATTTCTTCTTCGGGCGACCGTGTATCCTCAACATCAACGCTGTTATTAACGGAACCGTGCCCGTTTGAAGACCCTTGGCTGCTCACGGAAGCAGACCCGTCGCTGATAGCTGGTTCCTGCGTGGAACCGACCACTTGTTGGCTTTTTACATATTGAGGTTTGGTGGCTGCCAACCTCTCCACCGCGCTGACGCGTCCTCTATTCGCCTCGCTTTCTCGCTCCATCTGTCTTCTCAAAAACTCGGGTCCCTTCACAAGAATGCGCGACGCGTCCACGTCGGCCGAGCCTTGCGTTTTCTTCAGCATTATACAGTTCGGACGAGTATTTCGTTTTACGTCCACGACGGCCGAGTTGCAAAACGTTTCGAGGGTTCCGATAGCGAGGAGAACGCACTGACGCACACCTTTACC
>TU235492
TTTGAGGTCCTAAAACCAGCATGATAATTAGCCATTTTTCAACCATGTGTTCTCTTTGGAATTTCCTATGGGTTTTTAGAATGCCGGGTTTGGATTTATGAGTACAAGACGATCTGTACTTAGCATTCCCTTAAGAAATATTAATGTCAACATAAATTACAGATCAGCAAGCTGTAAAACAAGGACTAAAACTTCCATGAGGACATGTGTTTTTTGTCCTTATATAATAGCAATTTGTTACGCATGCTTTCAGGTGAGAGGTATAAATGTGTGTGGTTTATGTTGTACGGCAAAATCTCAAACACAGAATTACTCACAAACTTTAACTCACCATTCTAAAACCTCATAAGAAATTGGTGAATTAGCAGGTTGAATATGACCATAATGAACAAGTTAGCCAACTCGGTCAGGCAGGGAGCTTCTCTGATTGgctaaatactaaaatgtttaCAGAGTCAAGGGATCAGGTCACATGTGATCACATCCAATTGACATCTGCAAGATGCATTTGTGTTTGCTGCAATATGGCGTCTATCGGATGGCAAATAGATGTTTAaaagatgtctttaagatgttgaTGATTTAGAATGTATATGAATCTGACATCTTACGGATGTTCGTGCACAACAGACGCTTTCCAGATCACGCGATCTGTAACAGACGTCTTGCAGACGCACGTGTGCCATCTCGGGCTAACCAGGTCATTTTATGCGTGATACTGGGCAAACCGGGGCTTCTAACATGACCCAAGTTAATCCAGCTCTCGAAGAGTCTTCCCCGACTCCGCCGCATTTCTGCAGCTGTAAAGCCACTTGATGATCCGAGCGTTGCGCTCGACCACCGACGACCCCTGACGCACGGTCTCCTGCAGTTCCTCCTCGTGCGGGCCGTCGCTGCCCCTCGAGAACCCGTCATCCGAAGTCGAGACGCTGATGCTCCGGATTTTGGAGCCGGTGTCTTCGGAGCGCGCGGAGAAGTTCTCTCTGCCCAGCGACTCGACGACGTCGCCCTCGAGTCCGCAGTACTTGAAGAACGCGTCGAAGTCCGCGAAGTTTCTCGAGTAGCGCGAGCTGATGTCGGAGCTGGAGCGCGCCACCCCCTTGCGGCTCCTGCGGTCCTGCTCCTGGGTTTCGGCGACTTTCCTGTGCAGAGGTCCTTTCGGCTTTCCGTTCGTCTCGCCCGAGTGCCCGTTAGAGATGGTCAAAGTCACCTGAGCGGCCTTACGTGTGTCGCATTCGCCACCGCGCGCCGCTGAAAACGCGTTTGTCTTCTCTTTAAAGGCGAAGAGCGACTTTTTAATCAATCTCCTACTCCCGCCAGGCGATTCTCTTAAGAGTTCGCACTTTTGCCTGTATAGTAAAATGGAGTCTCGTTTCTTCGAGCTGCTCCGTCTCACCACATTAATTTCTTCTTCGGGCGACCGTGTATCCTCAACATCAACGCTGTTATTAACGGAACCGTGCCCGTTTGAAGACCCTTGGCTGCTCACGGAAGCAGACCCGTCGCTGATAGCTGGTTCCTGCGTGGAACCGACCACTTGTTGGCTTTTTACATATTGAGGTTTGGTGGCTGCCAACCTCTCCACCGCGCTGACGCGTCCTCTATTCGCCTCGCTTTCTCGCTCCATCTGTCTTCTCAAAAACTCGGGTCCCTTCACAAGAATGCGCGACGCGTCCACGTCGGCCGAGCCTTGCGTTTTCTTCAGCATTATACAGTTCGGACGAGTATTTCGTTTTACGTCCACGACGGCCGAGTTGCAAAACGTTTCGAGGGTTCCGATAGCGAGGAGAACGCACTGACGCACACCTTTACC

Function

NR:

description
PREDICTED: protein FAM110C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235489 False 2323 lncRNA 0.47 1 18642262 18644584
TU235490 True 2427 lncRNA 0.46 1 18642262 18644688
TU235492 False 1813 lncRNA 0.49 1 18642262 18644074

Neighbor

gene id symbol gene type direction distance location
acp1 acp1,LOC107707021,LOC107715013 coding downstream 4764 18624388 ~ 18637498 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding downstream 49408 18585124 ~ 18592854 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding downstream 58230 18579092 ~ 18584032 (-)
LOC122328643 tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365 coding downstream 71424 18568172 ~ 18570838 (-)
LOC122328645 tuba1b,tuba1c,LOC108255233,LOC107707017 coding downstream 71488 18564062 ~ 18570774 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding upstream 8764 18653452 ~ 18666191 (-)
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding upstream 170069 18814757 ~ 18829293 (-)
LOC122328577 LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778 coding upstream 341264 18985952 ~ 19059410 (-)
LOC122329081 NA non-coding downstream 27117 18613676 ~ 18615145 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding downstream 79120 18559420 ~ 18563142 (-)
LOC122328626 NA non-coding downstream 185756 18421859 ~ 18456506 (-)
G158984 NA non-coding downstream 199783 18440650 ~ 18442479 (-)
G158955 NA non-coding downstream 395435 18244923 ~ 18246827 (-)
G159052 NA non-coding upstream 3399 18648087 ~ 18648625 (-)
G159054 NA non-coding upstream 19714 18664402 ~ 18731816 (-)
G159055 NA non-coding upstream 25827 18670515 ~ 18672766 (-)
G159063 NA non-coding upstream 34848 18679536 ~ 18680426 (-)
G159079 NA non-coding upstream 119045 18763733 ~ 18763933 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 291915 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 339687 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 406726 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 583523 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 1219745 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 102703 18747391 ~ 18754712 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021842 si:ch211-225h24.2 coding NC_007134.7 CM002907.2 35402697 ~ 35498518 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_02657735_02658754 NA coding CI01000001 null 2657447 ~ 2660601 (+)