LOC122328577 (LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778)


Basic Information

Item Value
gene id LOC122328577
gene name LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18985952 ~ 19059410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224322.1
GAGTGTCCTCAGATCCTGCCAAGGTCCACTCAGATCTACATCCCTGTTGGTGTGATGAAGCTCCATCACTTTGTTGGCCGGGACCTTCCACAGCCTCAGTCTGGGCAGAGGAACTACGAGTGCATCTTCTATATTCGAGGGAAGGAGTACAGTGTCACTGCGCTAAGCGCTTCAACAGCACCAGCATACAGTGTCAGGAAGACCATGtATGACTATGAAGGAAATGACATCAGCGATCTGCCGGTGGATCTCTCAGTTGTGTGGAATGGAGATTTTGTCATTGACAACCCCTACAATATCCAAGCGCACCTGTACAAGTGTTACGCCATGCGGGACAGCTGTGGGATGTGTTTGAAAGCGGATCCCCGGTTCGACTGCGGCTGGTGCGTGCAGGAGAAGAAGTGTTCGCTGAGACAGGAGTGTGCTCCTCCAGAGAGCATCTGGATGCACCCCAGCGCAGGAAACAGTCGCTGCGCGCACCCCAAAATCAACAAGCTGTTACCTGAGACTGGACCACGGCAAGGTGGAACCAGACTCACCATCACCGGAGAGAACCTGGGTCTACAGTTTAGAGACATTATGACAGGTGTCTGTCTGGGAAAAGTACCCTGCGTTCCTATTGAAGAGGAATATGTTAGTGCAGAAAGGATTGTGTGTCTGCTGAACGACGCCACAGGATACCGCGTACAGGAAGCCCAGGTGGAGGTGTGCGTTAGAGACTGTCTGGCTGACTACAGAGCCCTCTCACCCAGGGCTTTCACCTTTGTGACGCCGTACTTCACACGTGTTCAGCCCGTTCAAGGACCTCTTTCAGGGGGAACCAGAATCACTATTGAAGGAAACCATCTCAACGCTGGCAGCTCTGTTGCAGTCAACATTGGGCGCCACCCTTgtcactttaaaaaGCGGAGCTCTAAAGAGATTGTGTGCGTTGACCCGGCTGGCGTGATCGCGGGAAGTACTCCGGTTATGGTGGACATTGACTCTGCTGAGCTGAGGAACCCTGAGGTGAAGTTTAACTACACAGAGGACCCCACCATCCTGAAGATAGACCCGGACTGGACCATTGCTAGCGGTGGGACTCTGCTGACGATCAGCGGCACCAACCTGGCCACCATTAAAGAGCCCAAGATCCGCGCCAAGTACGGCTCTGCCGAGTCCTTCCATAACTGCACAGTTTTCAACAACTCCGTTATGGTCTGTCTGGCCCCGTCTGTGGCTGATTCGGACAGAGGCTTTGCTGAGACTGGCAGCGGACCGGATGAGATCGGCTTCTACATGGATAACGTCCACGCCCTTGTGGTGGTCAACGAGAGCTTCAGCTACTACCCGGACCCCGTCTTTGAACCCCTCAGTCCAACAGGCATTCTGGAGCTCAAACCAACATCGCCCCTTATCCTGAAGGGTCGTAATTTGATTCCTGCGGCGGGTAACTCCAGACTTAACTACACAGTGTTTATTGGAGAGACGGCGTGCGTTCTGACTCTCTCCGAGACCCAGTTGCTATGCAGGCCCAACCTCACCGGACAGCACAAAGTGACGATCCGGGCAGGAGGGTTTGAATATTCCCCGGGCACGCTGCAGATCTACTCCGACAGCCTTCTCACCTTGCCTGCCATCATCGGGATCGGAGGAGGTGGAGGCCTCCTGCTGCTGGTCATCATCGCGGTGCTCATCGCCTACAAGCGCAAGTCCCATGGCGCTGACCGCACACTCAAAAGACTGCAGCTGCAAATGGATAACCTGGAGTCCAGAGTCGCTCTCGAGTGCAAAGAAGCTTTCGCTGAACTCCAAACTGACATCCATGAACTGACCCAAGAGCTGGATGGAGCTGGTATCCCATTCCTGGATTATCGAACCTACGCCATGAGGGTCCTGTTCCCTGGCATTGAGGACCACCCAGTGCTCAAGGAGATGGAGGTTCAAGCTAATGTCGAGAAGGCCTTGACTCTGTTTGGTCAACTCCTCACCAAGAAGCACTTCCTGCTGACATTTATCCGCACGCTGGAAGCTCAGCGCTCCTTCTCCATGCGTGACCGTGGCAATGTGGCATCACTCATCATGACAGCTCTACAGGGAGAGATGGAGTACGCTACAGGAGTCCTTAAACAGCTGCTCTCTGACCTCATCGACAAGACTGAGAGCAAGAACCACCCTAAACTGCTGCTCAGGAGaACTGAGTCTGTTGCTGAGAAGATGCTTACGAACTGGTTCACTTTTCTGCTGTACAAGTTCTTAAAAGAGTGTGCAGGTGAGCCTCTCTTCATGCTGTACTGTGCTATAAAACAGCAGATGGAAAAAGGCCCTATAGACGCCATCACTGGAGAGGCCCGATACTCTCTCAGTGAGGACAAACTCATCCGACAGCAGATTGACTACAAGACTCTGACTCTTCACTGTGTGAACCCTGAGAACGAGAACGGCCCAGAGGTGACTGTGAAATGCCTGAACTGTGACACTATCACCCAGGTGAAGGAGAAGCTTCTGGATGCTGTGTATAAAGGAAGCCCATACTCCCAGAGACCCAAAGCAGGAGATATGGACCTGGagTGGCGGCAGGGGCGACTGGCGAGGATCATTCTGCAGGATGAGGATGTCACTACTAAGATTGATAATGACTGGAAACGCCTGAACACACTAGCACACTATCAGGTAACAGATGGGTCTGTTATCGCCCTGGTGCCAAAGCAAAACTCTGCATACAACATCTCAAACTCATCTACCTTCACCAAGTCCCTCAGCAGATACGATAGTATGTTGAGGACGGCCAGCAGCCCAGACAGTCTGCGGTCCAGGACGCCCATGATCACACCCGATCTAGAGAGCGGTACCAAACTCTGGCACCTTGTCAAAAACCACGACCATGCAGACCAACGAGAGGGAGATCGCGGGAGCAAGATGGTGTCAGAGATCTACCTGACACGACTGCTGGCCACCAAGGGTACTTTACAGAAATTTGTCGATGATTTGTTTGAGACGATATTCAGCACGGCTCACCGTGGCAGTGCCCTCCCTCTCGCCATTAAATACATGTTTGACTTCCTGGACGAGCAGGCGGACAAACACCAAATCACAGATTCAGATGTTCGACACACCTGGAAGAGCAACTGTTTGCCTTTGAGGTTCTGGGTGAACGTGATCAAGAACCCTCAGTTTGTGTTCGACATCCACAAGAACAGCATCACAGATGCGTGCCTCTCCGTAGTGGCCCAAACCTTCATGGACTCCTGCTCCACATCTGAACACAAGCTCGGCAAAGATTCCCCTTCTAATAAGCTGCTCTATGCTAAAGATATTCCCAACTACAAGAACTGGGTAGAAAGGTATTACTCAGACATCGCACGCATGCCTGCCATCAGTGATCAGGACATGAGCGCTTATCTCGCGGAGCAGTCCAGACTCCACCTGAGCCAGTTTAACAGCATGAGCGCCCTTCACGAGATCTACTCCTACATCACCAAGTACAAAGACGAGATCCTGTCCGCACTACAGAAGGACGAGTTAGCTCGGCGACAGAGACTGCGCAGTAAACTGGAACAGGTTATCGACACCATGGCTCTGACAAGCTGAGGACCTCCTCCCCGTCTCTCCACCCACCTCAGCTGTCTCCCTCTGACCTCCTGACCCCGCCCCCGAGCCTCGCttacaggcacacacacacacacacacacacacacgcacgcacgcacatacacaaacacacacacactaagctAACGGACTGCAAGGACAGAAGCAGTACACTGGAGACCCCTCAGCCCAGGGTGGAAATCCTCTTTCATCACTTCCTTTGAACTCAACACGTACCAGAATGTCTCCCCGGACGCCACGTCCAACCAATAGGACTTcgttttttggatttttatcattttggagTGTGTGTTGAGCCATGCTTGTGTGCTTTTACTCACCAAGGATGTCTTGTATTATGAGCCAGAAGACCTTAAAGCCCATGAAGGATAAAAgcggtgtcttttttttttcccccacccGACATACAGCATTTTGATTTAGCGCTTactttaacaactttttttactCTTCGGGTTGATCAAACAACTCACTCACTCCAGTCTCCTGCCACTTGTGTTACTGCTGAATTTGCACAATTTACAGGAACTacaacaaatgaaaatgatataaatatatatataaatgtgtatagatatataaatacaactgcatttttatacaaaaagaGTGAAAAGATGCGTACAAAGTTTTCCATTTTAACATAGAAAAGAATAAGATGAATTTGATATGTGAAACAAAGACtgaactatgaaaaaaaaaatatcgaaAAAAATGTCCTGTgccatgttttatttgaatgttgtttagtgcaaaaaaaacgATTTTCTTTAGATAAAATGTGCTATGATTTAAATGTTGACTACCCTAGTGACTGAAGAACTGAGagtgaaaaaaatgtgcaaaaaagaaCAAACTCAGACAAATGTGTTCCCATGTGGTACCTAGTGTTTTTTGAGGAAATCGTCCTCACGAAAAACAAAAGGTTCATTGTTTAGTTGGTGGATGAATCtgtgtatttagtttttgtacacttttttcaACCTTTATTGCTATTATGGTTTTAGTCTGAAAGCCACTTGAGGACATATTCTTTGCTATTCCGTGTGAAAACTCGATCGAAAATTAATAATTGGCcgttttcattttgtgttcctTTCTCATATTCAGACGCGAGCACTCTAAGCCTCGgtaatttttgcacaattcAGTCTAGAATGAAGGAAAACTTGAGATTGAAGAACTGACGAATGTGTTTCGTTACTGATGATGTCACAATGTCGCATTCTGAGAAGGTTCAGTGGCATCGCAGTAAATGTAGCAAATGTTAATTCCATGCAGTTCCACTCACTTTTAGCAGCCTCCGTTTGTTAAAAGCTTACAAATCAAACCGTTGAGCACAGAACTTGTTTTTAAACTGATTAATTGTATGTGAATGCCACCCGTTCACGAAAACTGATAGTTAAGCTGATTTGAATTCATCTCAGAAAAGTGGTACCTATCGTCACGTCCTTAAACGCCCATCATGTCAGCAGTAGATGCTTTTTATggaatatgtgtatttattttatgttttgttgttcAATTTCGAGCTCATAAGCTACTTGGTTTCCttaatgccatttttattggatgtttttgtgctttttctcGATTTTTTCAACAGCCCACTAACTCGTCTCTATCAAGATTGGTGATTTGCAGtgttacaaatacaaatgtgaAGCGATTCTCAAACTGTTTCAGGGGTATCAAGCGGATGAAGTCGAGCTCTGCTTTACTTTTCTTCGCCATCTTGGTTGTTTTGGAGTTTCTCTTTATCTTCTCTCTTGCGAGCGTCGGTAACTCTGCGAGGATGTGTATTGCAGTGACTGGCTTTCATGTGCTGCAGCAGTTCTCTTAAAGTCAGTCGTGTTCAAACAAGAGAGAGCCTCTCCTCCTTTGGCTTTCCACTGAGATTAAAGCAGAAGTAGACTTTCTGAGATGCGATAGAAACGTCTTTGAAAGATTTAGGTCAGAACCCCaatgagagaaagagcgagGCGCACCAACCGAACGTTTGACAGGATCTCGCTCGCGTTACCTCAGCCATACATCAGGGTTCGTTCCAGCTGGGAAAGTAATAATGAATCActctttacacatttatttattttgggatTACGGTTTACGTTATTGATTTCATGCCATTGCGATTTCTCCTAATCAACCCGGAGCAGGCCTCCACAACTCTCTACGACGTATCTTCCACGAACAAGACAATCTCCTTGTAGACTCGAGATGTTCACCTGTTAGGAGCGGTCTTTGTTTTCAGTCTTTTCACAGGTGTTTACGAATTCGAAAGCGAATTAGAACGGTGTTGGATTTGCTCGCTTGTTTGTGTTTAGCTCTCATGAACTCTTAGCTATCATTTCTGGCAATCTTAGAGCTACGTGGAAGGAAGCATAAATGAAgtagatagatcgatagatagacTTCCTAACATACAGGACACAACTGCCGGACGTATATGTCTTAAATTTAAGAGTAGAAGGAAAAGGCTAGACGTTTAGCATTGCAGGTGACTTAGACCCTTCCGTCTGGCTTTCCTTAAGTTAGTATGTTCCATTCATTTTCAGTAGATGAGTTTCTGCATGCTTcgacattacaaaataatttgagAATACAAGCATGCTGTTCTACTTTCATTCCAAAGGCTGATGATGATCATTCTACATATCATAATGTACGGtctaacaatgtttttttttttttatcattgttttcCGGATGGAAAAATCTCAATGTGCTTTGCTTTGTGCTACGTAAGCGGGACTTTGGTGATGGTGATTGTAAAGCAGCTGGTTGCATTGTAATGTCTCAGGACGTGTTTCACTTTGATGTCGTCTTTGCCTTTCTTTCATgcgatttattttttatgacgAGTGCTATCTTTGATTTTCAATGGTTTTTAGATGTTGAGTTGTGGAACATGTGGAACTCTTCAGAGATATTCTAACATTTCAAAGACTTCGCTGTGTAAAGTATTTGAGTGATGCCTCTCATTTTACGACACTTGTTTTGAGAACTACTTTGAGTAcaggaacaaacaaacaaaaaaacgaaggAAAACAAGCCGAACATAAGGTGTTTCAGACTCACAGAGCTTTCGTTTCGCACAGAGTGCCTtgtcaactctctctctctctcatttctctcGACCTCCTCCGACCCTTCCATTTCCCACAATCCATTTCTTTCCATACGCCTCTTTATCTTTGTCTGGCCACGCCCTCTTTCTTACACTCCTCCTCAGTCCAAAAGACCAATCCGGGTTTTGATTTCTGCTCATGGTGTTTCCAGATTGAAGAAAAAATCCTTTTTGGAAGGATGAATTAACTTAAGCGTAGGAACAAAAATGTGAGCATGTAGATTTCAAAGAAAACGAAAACTAAagaattttaatactttattaattcTGATACCTTTTGAAGAGTTTCAGACTTGAATCAACTGTGACAGGTTGGCTGTTAAATGCTCATTGTGTAAATATTGTGCTCTTTCCTATTTTGCAaatttattatgtgtaaatatacacatgcatcaAGGAGAGATTAAACATTTTTCGCTAAAA

Function

NR:

description
PREDICTED: plexin-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224322.1 True 7144 mRNA 0.46 27 18985952 19059410

Neighbor

gene id symbol gene type direction distance location
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding downstream 156659 18814757 ~ 18829293 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding downstream 319761 18653452 ~ 18666191 (-)
acp1 acp1,LOC107707021,LOC107715013 coding downstream 348454 18624388 ~ 18637498 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding downstream 393098 18585124 ~ 18592854 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding downstream 401920 18579092 ~ 18584032 (-)
LOC122328331 NA non-coding downstream 2288 18945050 ~ 18983664 (-)
G159079 NA non-coding downstream 222019 18763733 ~ 18763933 (-)
G159054 NA non-coding downstream 254136 18664402 ~ 18731816 (-)
G159063 NA non-coding downstream 305526 18679536 ~ 18680426 (-)
G159055 NA non-coding downstream 313186 18670515 ~ 18672766 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other downstream 231240 18747391 ~ 18754712 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 635605 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 683377 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 750416 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 927213 18045926 ~ 18058739 (-)

Expression


Co-expression Network