pmelb (LOC107664180,LOC107593983,LOC107715011)


Basic Information

Item Value
gene id pmelb
gene name LOC107664180,LOC107593983,LOC107715011
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18579092 ~ 18584032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224448.1
AAAGAGTGACGCCTCTCAAGCTGAAAGTCATTAAGGTGCTAACAACAAACTGAAACAATGAAGCTACTATCAAGAATACTGATACTGACCTGTCTGTCTGTGGCCTTAACAAGGCAATTCGACAGAAGCAACTCGAAATCCAGATTCAATCAATATCAGACATGGAATACAAAACGGTTCCCAGTGTGGAAAGATGGAGACCCACGCTACAAAAACAGCTGGACAGGTGGACAGCTGAAGTTTGACGTGGGAAATGATGCACCCACTTTGACTGGCGCCAAAATCACCTTCACCATTGACATTGTGTTCCCTCACAACCAGAAGGTCCTGCCGGACGGTCAAGTAGTTTGGGCAAAAAACTGCACAATAAATGGCACACGGTTCCACGAGGGTGAGCCTGTCTATCCTGCGGAGAACTCTGCAGATGAATGGAACACTGTGTTCCCTAACGCTCCTCTACTTTCAAGACAAGGGGACAAGCCACCTCCATATGTGTTTGTATGGAAAACCTGTGGTAAATACTGGCAGGTGTGTGACGGCTCTTCCTCATCATTAACCATCGGAACGGATGACGTTCCTCTTGGCTCTTACATGATGGATGTTGTCATTTATCACTATAGGCAAAAAGAGAAATTCATCCCTATTGGATATGCATCCACACAGTTCAGTATCACCGACCAGATTCCCTTTGCGGTTTCCCTGACGCAGGTGAATGACAAAGAAGAAGGTGATCAGAAATTCATCCAGAACAAAGCAGTGGCCTTCAGCATCACCCTTCATGACCCCAGCCAATACCTGAGCAAATCAGACGTGACTTTTAACTGGAACTTCGGGGATGGCAGTGGCACTGTGATCTCCAGAGAGCTCACCGTCACTCACACCTACATTACAGCCGGAGCTTTCAAGCCCCAAGTCGTCGTACAAGCAGCTATTCCGGATTCATCTTGTGCCACTCCACCAAACCTTCCCACTGAGGCCGGTCCGTCCATCAACACCCTCACCTCTGAGAGCCCCATCCGCCTGAATCAACACATCACTGCAGATCATGCTGCCAGTATGTCTCCCATTCAGAAATTCAAACCTGCATCTACAATGAAAACTTTCCCATCCGAACCTACTAATGGAGTTCCAACAATATCCAGCCTTAAGAAGGTCTTTGATCTTAGATCTGCATCAGAGACGTCTGAAACTTTGAACACTGCAACAAAGGCGACTGCCGCTGACGTGGAGGCGTCGATGGAGGATGACTTTGAAAACCAGGCCCATGTATCAATAATAAAGCGTCAGGCTCCTAACACAAACTGTATGATTTACCGCTACGGATCCTTCTCCACTGATATTGAGATTATTGAGGGCATTGAGAGTGTGCAGATCGTCCAGGTGGATGTAGCTGATGGTTTTCTGCTAACGGAGATGGAGCAGAATGCTGTTGATTTCACTGTTTCCTGCCAAGGAAGCCTCCCTACTGAAGTCTGCACTGTGGTATCGGATGCTGACTGCCATGTGCCAGTTATGACCATCTGCAATGCTGTTAGCCCCTCCACAGACTGCCAGCTCATCCTTCGACACTACTTCAATGACTCTGGGATCTTCTGTGTCAATGTGTCAATGACGAATGACGTCAGTCTGGCTTTCACAAATGCCAGGGTTAATATTAACCTAGCAGATTCCAGGTTGACATCTGCAGGTGCCGCTGCCCTTTTGTTGGGCATCCTGACCGTCATATCAGCAATGGGTGCTGTGGCTTTTGCGTATAAGCATCTTAAAGGGTATCAAAGGCTGAATGAGGATCCTGCTGCATGGCAATCCAAAGACACTGGCGTGAGCTCAATGCCGGCGTTTTTCTGGAGCCTAATGAATCAGAATACTGCAGATCAGAAAAAAGGAGTAGTGTGAATTTTCCTTTAAAACCATCACAATTcaaattttatgttatattagtaatattttgaaaaacgtaaaaaattttttttttttttaattttattttaatctttaatatttgaattgagattttgtattctttttataCACATATTTGACCCCAAATCCGTTTTCTACAAAtgatttcattacattacattacacaaaATTTTGTATCgtgattttaaattgaaaaaaaagaagctggccaacaagcattttttttaaccaaatgaataaaatatcacaaaagcTGC

Function

NR:

description
melanocyte protein PMEL-like isoform X2

GO: NA

KEGG:

id description
K17304 PMEL, SILV; melanocyte protein PMEL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224448.1 True 2180 mRNA 0.44 12 18579092 18584032

Neighbor

gene id symbol gene type direction distance location
LOC122328643 tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365 coding downstream 8254 18568172 ~ 18570838 (-)
LOC122328645 tuba1b,tuba1c,LOC108255233,LOC107707017 coding downstream 8318 18564062 ~ 18570774 (-)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding downstream 33599 18535712 ~ 18545493 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding downstream 71351 18456925 ~ 18507741 (-)
hoxc13a hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009 coding downstream 175336 18400997 ~ 18403756 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding upstream 1092 18585124 ~ 18592854 (-)
acp1 acp1,LOC107707021,LOC107715013 coding upstream 40356 18624388 ~ 18637498 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding upstream 69420 18653452 ~ 18666191 (-)
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding upstream 230725 18814757 ~ 18829293 (-)
LOC122328577 LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778 coding upstream 401920 18985952 ~ 19059410 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding downstream 15950 18559420 ~ 18563142 (-)
LOC122328626 NA non-coding downstream 122586 18421859 ~ 18456506 (-)
G158984 NA non-coding downstream 136613 18440650 ~ 18442479 (-)
G158955 NA non-coding downstream 332265 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 340560 18237897 ~ 18238532 (-)
LOC122329081 NA non-coding upstream 29644 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 58230 18642262 ~ 18644688 (-)
G159052 NA non-coding upstream 64055 18648087 ~ 18648625 (-)
G159054 NA non-coding upstream 80370 18664402 ~ 18731816 (-)
G159055 NA non-coding upstream 86483 18670515 ~ 18672766 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 228745 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 276517 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 343556 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 520353 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 1156575 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 163359 18747391 ~ 18754712 (-)

Expression


Co-expression Network