LOC122328643 (tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365)


Basic Information

Item Value
gene id LOC122328643
gene name tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18568172 ~ 18570838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224450.1
CACTCGTATATAAAGTGAGGTCAGTCCGTTATAACGTTATTCTTCTTACATCGACCCCTTAGTTGTCGAACTGTAAGATTTCTCCGTCAAGAATCTTTTCTCACCCGGCCAAGCAACACTAACAGGAACAATGCGTGAGTGCATCTCTATCCACGTTGGTCAAGCTGGAGTCCAGATCGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCATGGCATCCAGCCGGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGTGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGTACATACCGTCAGCTGTTCCACCCTGAACAGCTCATCACTGGAAAGGAAGATGCTGCCAATAACTATGCCCGTGGTCACTACACTATTGGAAAGGAAATCATTGACCTGGTGCTGGACAGGATTCGCAAACTGgctGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCCGCTCCTCAGGTCTCCACCGCTGTAGTTGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTATGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTACTTACACCAATCTCAACAGGCTTATTGGCCAGATTGTGTCCTCTATCACAGCCTCCCTTAGGTTTGATGGTGCCCTCAATGTTGATCTTACAGAATTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCATTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCCGAAATCACTAATGCTTGCTTTGAGCCAGCAAATCAGATGGTGAAATGCGACCCACGTCACGGCAAATACATGGCTTGCTGCCTGCTGTACCGTGGTGATGTGGTGCCCAAAGACGTGAATGCTGCAATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGGGATCTGGCTAAAGTGCAGAGGGCTGTGTGCATGTTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAAGTCGGTGTCGACTCCATCGAGGGTGAGGGAGAAGAGGAGGGCGAGGAGTATTAGATGACAGAATGAAGAGCAACATGCAGGAACCCTGACATGGAAAAATTCAAGCATTGAAAAATAAACCTTACCACcaatgaaaataatgttgttaCAGTTCTTTGGACATCTGAAATAAAGCTCCTtttcaaatgaa

Function

symbol description
tuba1a Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).

NR:

description
PREDICTED: tubulin alpha-1A chain-like

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224450.1 True 1622 mRNA 0.51 4 18568172 18570838

Neighbor

gene id symbol gene type direction distance location
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding downstream 22679 18535712 ~ 18545493 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding downstream 60431 18456925 ~ 18507741 (-)
hoxc13a hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009 coding downstream 164416 18400997 ~ 18403756 (-)
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding downstream 174653 18391950 ~ 18393519 (-)
hoxc11a hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846 coding downstream 185242 18379954 ~ 18382930 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding upstream 8254 18579092 ~ 18584032 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding upstream 14286 18585124 ~ 18592854 (-)
acp1 acp1,LOC107707021,LOC107715013 coding upstream 53550 18624388 ~ 18637498 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding upstream 82614 18653452 ~ 18666191 (-)
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding upstream 243919 18814757 ~ 18829293 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding downstream 5030 18559420 ~ 18563142 (-)
LOC122328626 NA non-coding downstream 111666 18421859 ~ 18456506 (-)
G158984 NA non-coding downstream 125693 18440650 ~ 18442479 (-)
G158955 NA non-coding downstream 321345 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 329640 18237897 ~ 18238532 (-)
LOC122329081 NA non-coding upstream 42838 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 71424 18642262 ~ 18644688 (-)
G159052 NA non-coding upstream 77249 18648087 ~ 18648625 (-)
G159054 NA non-coding upstream 93564 18664402 ~ 18731816 (-)
G159055 NA non-coding upstream 99677 18670515 ~ 18672766 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 217825 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 265597 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 332636 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 509433 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 1145655 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 176553 18747391 ~ 18754712 (-)

Expression


Co-expression Network