LOC122328645 (tuba1b,tuba1c,LOC108255233,LOC107707017)


Basic Information

Item Value
gene id LOC122328645
gene name tuba1b,tuba1c,LOC108255233,LOC107707017
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18564062 ~ 18570774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224452.1
AAAGTATAAATAGTCCCACCCGCCTTTTTCAGGCATTTCATTCTCACCAGACTCATAAAAGTCGGCTTGTGAGAGCGCTATTAACAGAAAACCTACGATTTCCATCTCCTcgtattttttgtaacaaaacgTTTGAAAATGCGTGAGTGCATCTCTATCCACGTTGGTCAAGCTGGAGTCCAGATCGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCACGGCATCCAGCCGGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGGGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGTACATACCGTCAGCTGTTCCACCCTGAACAGCTCATCACTGGAAAGGAAGATGCTGCCAATAACTATGCCCGTGGTCACTACACTATTGGAAAAGAACTCATTGATCTTGTTTTGGACAGAATTCGCAAATTGGCTGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCCGCTCCTCAGGTTTCCACTGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTACGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTTCTTACACCAATCTCAACAGGCTGATCAGTCAGATCGTGTCCTCCATCACAGCCTCCCTCAGGTTTGATGGTGCCCTCAATGTTGATCTTACAGAATTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCATTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGTCCGAAATCACTAATGCTTGCTTCGAGCCAGCAAATCAGATGGTGAAATGCGACCCACGTCATGGCAAATACATGGCTTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCCAAAGACGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGGGATCTGGCTAAAGTGCAGAGGGCTGTGTGCATGTTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTTGGGGCTGAGAGTGTGGAAGAAGATGAAGGTGAAGAATATTAGAAATTCTTTTGACTTCCACTACCTGGTTTCCTGTCCgttgtcatttttgtgtgctGCTTTTCCTCACTTTCCAGTTGTCATCTGGTTAAAAGGtcaatctttaattttttttttcttggaaagaaaataaaatgttatgatatTTA
>XM_043224453.1
GTCGAACTGTAAGATTTCTCCGTCAAGAATCTTTTCTCACCCGGCCAAGCAACACTAACAGGAACAATGCGTGAGTGCATCTCTATCCACGTTGGTCAAGCTGGAGTCCAGATCGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCACGGCATCCAGCCGGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGGGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGTACATACCGTCAGCTGTTCCACCCTGAACAGCTCATCACTGGAAAGGAAGATGCTGCCAATAACTATGCCCGTGGTCACTACACTATTGGAAAAGAACTCATTGATCTTGTTTTGGACAGAATTCGCAAATTGGCTGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCCGCTCCTCAGGTTTCCACTGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTACGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTTCTTACACCAATCTCAACAGGCTGATCAGTCAGATCGTGTCCTCCATCACAGCCTCCCTCAGGTTTGATGGTGCCCTCAATGTTGATCTTACAGAATTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCATTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGTCCGAAATCACTAATGCTTGCTTCGAGCCAGCAAATCAGATGGTGAAATGCGACCCACGTCATGGCAAATACATGGCTTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCCAAAGACGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGGGATCTGGCTAAAGTGCAGAGGGCTGTGTGCATGTTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTTGGGGCTGAGAGTGTGGAAGAAGATGAAGGTGAAGAATATTAGAAATTCTTTTGACTTCCACTACCTGGTTTCCTGTCCgttgtcatttttgtgtgctGCTTTTCCTCACTTTCCAGTTGTCATCTGGTTAAAAGGtcaatctttaattttttttttcttggaaagaaaataaaatgttatgatatTTA

Function

symbol description
tuba1b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in several structures, including ectoderm; integument; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human TUBA1B (tubulin alpha 1b).
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: tubulin alpha-1A chain-like

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224452.1 True 1631 mRNA 0.50 4 18564062 18567287
XM_043224453.1 False 1559 mRNA 0.50 4 18564062 18570774

Neighbor

gene id symbol gene type direction distance location
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding downstream 18569 18535712 ~ 18545493 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding downstream 56321 18456925 ~ 18507741 (-)
hoxc13a hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009 coding downstream 160306 18400997 ~ 18403756 (-)
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding downstream 170543 18391950 ~ 18393519 (-)
hoxc11a hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846 coding downstream 181132 18379954 ~ 18382930 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding upstream 8318 18579092 ~ 18584032 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding upstream 14350 18585124 ~ 18592854 (-)
acp1 acp1,LOC107707021,LOC107715013 coding upstream 53614 18624388 ~ 18637498 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding upstream 82678 18653452 ~ 18666191 (-)
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding upstream 243983 18814757 ~ 18829293 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding downstream 920 18559420 ~ 18563142 (-)
LOC122328626 NA non-coding downstream 107556 18421859 ~ 18456506 (-)
G158984 NA non-coding downstream 121583 18440650 ~ 18442479 (-)
G158955 NA non-coding downstream 317235 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 325530 18237897 ~ 18238532 (-)
LOC122329081 NA non-coding upstream 42902 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 71488 18642262 ~ 18644688 (-)
G159052 NA non-coding upstream 77313 18648087 ~ 18648625 (-)
G159054 NA non-coding upstream 93628 18664402 ~ 18731816 (-)
G159055 NA non-coding upstream 99741 18670515 ~ 18672766 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 213715 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 261487 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 328526 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 505323 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 1141545 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 176617 18747391 ~ 18754712 (-)

Expression


Co-expression Network