LOC122328712 (kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485)


Basic Information

Item Value
gene id LOC122328712
gene name kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7822122 ~ 7832584 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224571.1
CAGTGAAGCGCAGCTGATGTGTGTGATTCTCTGTCAGACGCGATTGTGTTTCGGATCTTCCTGTGTTTCGGTGGAAATCGGTGAGATATTTTGAGCATATGATTTCATCCGTACGTGTTGATGACAGAACCGCCTTTATCTTTTATTCATTCGTGCGGACCGCAGAGATTTGCACCGGGACTGACATTATGCGCTCGGTAACCGGGTGATGCTGATGCTGACATCTTCCATCATCCATCTGCTTTAACGGAACTACCGCGCTCATTCCCGATCCATTCATCTCGCAGACGGCTTCGACATGTCCATGAAAGCGAAAAACGGAGAAACGGTGAAGGTGGTGGTTCGGTGTCGCCCGCTCAACCGTAAAGAGGAATCGATGGGGTACGAGAATATCGTGCAGATGGATGTGAAACTGGGCCAGGTGGCCCTGCGGAACCCCAAGGCGGGTCTGGGAGAGCTGCTCAAGACCTTCACGTTCGACGCGGTTTACGACGCGTGTTCCAAACAGAGCGACCTGTACGACGAGACGGTGCGGCCGCTCATCGACTCTGTTTTGCGCGGCTTTAACGGCACCATCTTCGCGTATGGACAAACGGGAACCGGGAAGACGTACACCATGCAAGGCCAGTGGCTTGACGCCGAGCGCCGCGGCATCATCCCAAACTCGTTCGAGCACATCTTTACGCACATCTCGCGCTCTCAGAACCAGCAGTATCTGGTCCGGGCCTCTTATTTGGAGATCTACCAGGAGGAGATCCGAGACCTGCTCACCAAAGACCACAGCAAGAAGCTGGAGCTGAAGGAGAGCGCCGACTCAGGGGTCTACATAAAAGATCTGTCCTCCTTCGTCACCAAGAACGTGAAGGAGATCGAGCATGTGATGAACGTTGGGAACCAAACCAGATCGGTGGGTTTTACCAATATGAATGAGCACAGCTCAAGGTCTCATGCTATCTTTATCATCACGGTGGAGTGCAGCCAGCTCGGGCCGGATGGACAGAACCATATCCGCGTAGGCAAACTCAATTTGGTTGACCTGGCTGGGAGCGAGCGCCAGACCAAGACTGGCGTACAAGGAGAACGTCTGAAGGAGGCCACCAAGATCAACCTGTCTCTCTCAGCTCTGGGAAACGTAATCTCTGCGTTGGTGGACGGGCGAAGTTCTCACGTTCCCTACCGTGACTCTAAACTCACGCGCTTGCTGCAGGACTCACTGGGCGGGAACGCCAAGACCATCATGGTGGCCACGTTGGGACCGGCCTCCTACAATTACGAGGAGACCCTGACCACCCTGCGTTACGCCAACCGCGCCAAGAACATCAAGAACAAGCCTCGCGTCAACGAAGACCCCAAAGACGCCCTCCTCAGGGAGTTCCAGGAGGAGATCGCCCGGCTGAAAGCGCAGCTGGATAAACGCGGCATGCTCAccaagaggaagaggaggagcaggagaCTGAGGAAGATCGGAGATGGCGGCGAGGTAGAAGAGGGAGAAGAGGATGATGGcgaggatgaagaggaggaggaggaggagagcgtGGAGAAGGAGGCGCAGGAGTACATGAAGGAGCAGCAGGAGAAGCTGGAGAGGGAGAAGGAGGCCATCAGAGATGACCATTCTCTGGTGGCCGAGGAGAAACAGAGGCTCCTGGAGGAGAAGGAGAGGATGATGAGACATCTGAAGAAGGAGCAGGAGGCCACTGAACTCCTCACAGCCAAGTTTAAGGCCATGGAAAGCAAGCTGCTGGTGGGAGGAAAGAACATTGTCGACCACACCAATGAGCAGCAGAGGATTCTGGAGCTGAAGAGGCAGGAGATAGCCGAACAGAAAAGGCGGGAAAGGGAGATGCAGCAGGAGATGGAGTGTCGTGACGAAGAGACGCTGGAGCTCAAAGAGACGTACAGCTCCCTGCAGCAGGAAGTTGACATTAAGACCAAGAAACTGAAAAAgCTCTTTTCCAAGCTGCAGTCTGTGAAGGCGGAGATTCAGGACGCCCAGGACGAACACGTCAAATACAGGCAGGAGCTGGAGCAGACGCAGAATGAGTTGACCAGAGAACTCAAACTTAAACATCTGATCATAGAGAACTTCATCCCAACGGAGGAGAAGAACAAGATCGTCACGAGAGCCACTTTTGATGAAGAAGATGACCTTTGGAAGATGACCCCCATCACTCGTATTCAAAATGATCAGCAGATGATGAAAAGGCCTGTTTCTGCAGTGGGCTACAGACGGCCTCTGAGTCAGCACGCCCGTATGGCCATGTTGATGCGGCCTGATGTCAGATACAAGGCTGAGAATATCTTGCTGCTGGAGTTGGACCTTCCCACTCGGACCACAAAAGACTACGAGGGGCCGGTGATCGCTCCTAAAGTGGCTGCGGCTCTGGAGGACGCTCTGAGGGAGGAAGATGAGATCCAGGTGGACGCCTCTGGTCTTCGTGCCAGCCTGGGCTCCAGTCCAGGCCTCAGTGCCTCAGCTGCTGGGTTTTCCAAGAAACCAAAGTCAGGCCGCCCAAAAACTGGCAAGAAGGTGAGCACTCCAACTTCAGCTCACAGCCCTTTGTCCGGCTCAGGGTCCCCTCTTTACCCACAGTCCCGAGGCCTTGTGCCaaagtgaaaataatgaaaacctTCACCGCTCCATGTAAACTGACTGGCTTTGGCATTAAAGTTGTCATTTTTAGACAGATTTACGACAGTAGAACATCTTGGTGTTTTATTCAAACCCACCAATTGGCCCTCAAACTAACTTGTTTTTAGATATCACGTAAACATAAGGTTTATAGcgcaaaaaaaagttacatttggtGAGAATTAAATCTCAACGCAAGATTTAGTTCCACAGATTTAGTTTGCACTCAAGCAAAatgttacgtgtgtgtgtgtgtgaggtcattGAGACAGCAGATGGTCTCGAAATTGACCATACGTGGTAGTTACGTCATTgtgggaatgtttttttttcttctgtgtccAGTTGTAGGATTAACAAATTTCTCACAAAGTAGCTGGAGATGAGATTTATGCTGGTCTGGGCCACTAAAGCACTGTATTGTTGTTTGACAAGAGAGTAAGCACATTACGTCATTGGCTAAGACCCAAAACAACCTCTAAGCCTTTTTTCGAAGACTCTTTGAGTCGCTTTGGCTGGGAGATGGGCCCAGAAACGCACTTGACCGGGTTGCCGTCACAGTCAGCGCTGTATCCAGTAAGAAAAGGAATTAGGGGGTTTAAAGGTCATTACATACTAAAAATATCAGGGTTCCAAGGTGCCTTAGATTCTCTTTACATACAGAAGTTTGGTCTGAGAGTCCCTTGACCTGATAGCTGGACAGTTGAACCCGAAATCCACACCAAAACCCCTGTGGATGGTTCATGAATGCTTTGAATTACACTAGAAGTCTGTCGTGTTGGGCAGGCTTGTATTTGATGTTCACGGGGATCTGAGTTTGACACGAGGAAGTCTTATTTCTGTTGAACTAGTGAAGGTAATACCATTGCCTGCTGCTACTGTAGGGTTCTTTTACCCCTGTGTCATAGCATACGGTTATGTATATTAAGACATGTTAGTAAATAAATCTGCATCATCATTGCAGTTGTATTtaaatccaaaataataaatgcagtcttaaagtaacattttaaaaaggctaaGTTATTACCATACTAGTCGGTTTTATATTCAAGCAATTGTAGATAGTTTTTAACAGTCGTATTTTCTTTGCTTAGATTTATAtggtttatttttgaatatgtattatttaaagttgtgtacaaatttatttttgcatataagATTTAAGTATCATTTTCATGTGATTCACTGCGTTCTCTTGTGTTGAGCGAAATGCGCCATCGTCGTATAATAAACACGCAGCTTTTGGATCGTCAGAACGTGTCCTGCAAATCCTGATGCTGCTCATTGAAATCGGTGTGAATTTCTTCATTTGAGTATGCATTATCTAATCAATGTTCACGCTGCCACTCCTGGCTGTATTAATGCATAAGTCATTAGTCGCCGTTATGTTATTTTTGAGGTTTTAGCATGACATGAGAACATCCAAAGCATTATAGGCAAAATGAAACCGTACGTCGGCGGTCTAATACTCCACTTTCACCTTCTTCCATGTGATGCATGAGTCCAGTGCGAATACCTACACtgagaaaataattttactgttcacacaggtttttgttttgtactaAAATGTTTTCGAATTTGTATTTGAGTTTAGAATGCAAATGTCCTCAATGTTTTAACCATCTTTAATTAAAAGGATGATTATTCTCTA

Function

symbol description
kif3b Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including cilium assembly; photoreceptor cell outer segment organization; and sensory organ development. Part of kinesin complex. Is expressed in forerunner cell group and retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 89. Orthologous to human KIF3B (kinesin family member 3B).

NR:

description
PREDICTED: kinesin-like protein KIF3C

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0048839 inner ear development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048884 neuromast development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224571.1 True 4295 mRNA 0.48 8 7822122 7832584

Neighbor

gene id symbol gene type direction distance location
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding downstream 33835 7784305 ~ 7788287 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 39405 7774301 ~ 7782717 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding downstream 296621 7522064 ~ 7525501 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding downstream 479423 7310570 ~ 7342699 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding downstream 730878 7088177 ~ 7091244 (-)
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 21720 7854304 ~ 7861354 (-)
LOC122328942 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 29619 7862203 ~ 7866387 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding upstream 89669 7922253 ~ 7932104 (-)
LOC122329207 hck,LOC107681869,LOC107707747,LOC107690859,LOC107747493 coding upstream 99859 7932443 ~ 7954995 (-)
gata5 gata5,LOC107681871,LOC107707745,LOC107747495,LOC107559469,LOC107690861 coding upstream 146307 7978891 ~ 7985474 (-)
G155670 LOC102294427,LOC107690852,LOC107681385,LOC108440950,LOC107559486,LOC100536777,LOC107747485 non-coding downstream 4751 7766248 ~ 7817371 (-)
G155629 NA non-coding downstream 337917 7483923 ~ 7484205 (-)
G155628 NA non-coding downstream 339630 7482027 ~ 7482492 (-)
G155627 oprl1,LOC107705672,LOC107681404,LOC107666560,LOC107727003,LOC107559467 non-coding downstream 341552 7479495 ~ 7480570 (-)
G155624 NA non-coding downstream 360820 7460929 ~ 7461302 (-)
G155684 NA non-coding upstream 1978 7834562 ~ 7836538 (-)
G155698 NA non-coding upstream 140519 7973103 ~ 7973325 (-)
G155737 NA non-coding upstream 344115 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 474695 8307279 ~ 8382607 (-)
G155803 NA non-coding upstream 693818 8526402 ~ 8532927 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 543799 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 818599 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 840161 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 954822 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 999090 6766608 ~ 6823032 (-)
G155807 NA other upstream 712810 8545394 ~ 8551977 (-)
G155827 NA other upstream 793174 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1080478 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1088980 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1246948 9079532 ~ 9097302 (-)

Expression


Co-expression Network