G155596 (sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663)


Basic Information

Item Value
gene id G155596
gene name sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7276448 ~ 7278323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230401
ACAAGAACTATATACCGTCTGGAGGGCAGGAGTTACAAAACACTAACATCTGTGGGATTTTATACTTTGTACTCCGAAACATCCGAAAAGAAAGGGTgcagctctttttctttcttttttacgaTTTGTTTCATTTGGGTTACTGGTCAGTCTGTATTTAAAGTAGCTTAAAGTAGCTCGGTGTTGCTTCTATCCAAAGACAACAGCGTGCTTTAACCGTGGTGGTCTTGCTGGAATGAATATATCTGAGTCTAGTTGCTGTCAAGAGGCCAGTTCTCAGCCCAGCCAGGTTGCGGAGCGTGGGACATGGGGTGCCTCTTCCAGCACTCCGGGCCCTGACCGGGGACATGGTTTTGACCACAGCCGGACCACAGAGCTGGCGCCGGTGCCCGGCTCTGGAACGCGGACAGGGTCCCGAAGCGGAGCGGAGGCCAGGACGGGGAGCCCGGACTCAACCCGCACTGGAGCTCTGACCCTAGGCTCCGGAGAGGGGAAATCAGGGGGAGAGTCCAGGATCAGGAGGCCCATGAATGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAACGTCTGGCACTCCAGAACCCAGACCTGCATAACGCCGTGCTCAGTAAGATGCTGGGTCAATCCTGGAAGGCTCTAAGCACCCTAGACAAGCGTCCGTTTGTGGAGGAAGCCGAACGACTGCGTTTGCAGCACCTCCAGGATCACCCAAACTACAAATACCGTCCTCGCCGCAAGAAACAACCCAAGAAGATGA

Function

symbol description
sox18 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within artery development; lymphangiogenesis; and vasculogenesis. Predicted to be located in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; immature eye; intermediate cell mass of mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in hypotrichosis-lymphedema-telangiectasia syndrome and hypotrichosis-lymphedema-telangiectasia-renal defect syndrome. Orthologous to human SOX18 (SRY-box transcription factor 18).

NR:

description
PREDICTED: transcription factor Sox-18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230401 True 758 TUCP 0.54 2 7276448 7278323

Neighbor

gene id symbol gene type direction distance location
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding downstream 185204 7088177 ~ 7091244 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding downstream 216197 7008897 ~ 7060251 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding downstream 350032 6871977 ~ 6926416 (-)
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding downstream 418983 6838807 ~ 6857465 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding downstream 456605 6805369 ~ 6819843 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding upstream 32247 7310570 ~ 7342699 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding upstream 243741 7522064 ~ 7525501 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 495978 7774301 ~ 7782717 (-)
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 505982 7784305 ~ 7788287 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding upstream 543799 7822122 ~ 7832584 (-)
G155606 NA non-coding downstream 151862 7122929 ~ 7124586 (-)
G155597 NA non-coding downstream 170294 7100308 ~ 7106154 (-)
G155586 NA non-coding downstream 208624 6929686 ~ 7067824 (-)
G155578 NA non-coding downstream 437882 6837129 ~ 6838566 (-)
G155508 NA non-coding downstream 440859 6835375 ~ 6835589 (-)
G155620 NA non-coding upstream 122658 7400981 ~ 7401192 (-)
G155623 NA non-coding upstream 181208 7459531 ~ 7459780 (-)
G155624 NA non-coding upstream 182606 7460929 ~ 7461302 (-)
G155627 oprl1,LOC107705672,LOC107681404,LOC107666560,LOC107727003,LOC107559467 non-coding upstream 201172 7479495 ~ 7480570 (-)
G155628 NA non-coding upstream 203704 7482027 ~ 7482492 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 272925 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 294487 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 409148 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 453416 6766608 ~ 6823032 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 544562 6730851 ~ 6731886 (-)
G155807 NA other upstream 1267071 8545394 ~ 8551977 (-)
G155827 NA other upstream 1347435 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1634739 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1643241 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1801209 9079532 ~ 9097302 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G839949 LOC106572917 non-coding NC_048573.1 CM023227.2 74172939 ~ 74173821 (+)