RNA id: TU230401


Basic Information

Item Value
RNA id TU230401
length 758
RNA type TUCP
GC content 0.54
exon number 2
gene id G155596
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7276448 ~ 7278323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGAACTATATACCGTCTGGAGGGCAGGAGTTACAAAACACTAACATCTGTGGGATTTTATACTTTGTACTCCGAAACATCCGAAAAGAAAGGGTgcagctctttttctttcttttttacgaTTTGTTTCATTTGGGTTACTGGTCAGTCTGTATTTAAAGTAGCTTAAAGTAGCTCGGTGTTGCTTCTATCCAAAGACAACAGCGTGCTTTAACCGTGGTGGTCTTGCTGGAATGAATATATCTGAGTCTAGTTGCTGTCAAGAGGCCAGTTCTCAGCCCAGCCAGGTTGCGGAGCGTGGGACATGGGGTGCCTCTTCCAGCACTCCGGGCCCTGACCGGGGACATGGTTTTGACCACAGCCGGACCACAGAGCTGGCGCCGGTGCCCGGCTCTGGAACGCGGACAGGGTCCCGAAGCGGAGCGGAGGCCAGGACGGGGAGCCCGGACTCAACCCGCACTGGAGCTCTGACCCTAGGCTCCGGAGAGGGGAAATCAGGGGGAGAGTCCAGGATCAGGAGGCCCATGAATGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAACGTCTGGCACTCCAGAACCCAGACCTGCATAACGCCGTGCTCAGTAAGATGCTGGGTCAATCCTGGAAGGCTCTAAGCACCCTAGACAAGCGTCCGTTTGTGGAGGAAGCCGAACGACTGCGTTTGCAGCACCTCCAGGATCACCCAAACTACAAATACCGTCCTCGCCGCAAGAAACAACCCAAGAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230414 lncRNA downstream 151862 7122929 ~ 7124586 (-) True G155606
TU230405 lncRNA downstream 170294 7100308 ~ 7106154 (-) True G155597
TU230388 lncRNA downstream 208624 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA downstream 208624 7063578 ~ 7067824 (-) False G155586
TU230378 lncRNA downstream 437882 6837129 ~ 6838566 (-) True G155578
TU230442 lncRNA upstream 122658 7400981 ~ 7401192 (-) True G155620
TU230445 lncRNA upstream 181208 7459531 ~ 7459780 (-) True G155623
TU230446 lncRNA upstream 182606 7460929 ~ 7461302 (-) True G155624
TU230449 lncRNA upstream 201172 7479495 ~ 7480570 (-) True G155627
TU230450 lncRNA upstream 203704 7482027 ~ 7482492 (-) True G155628
XM_043225559.1 mRNA downstream 185204 7088177 ~ 7091244 (-) True sox18
XM_043224180.1 mRNA downstream 216197 7008897 ~ 7060251 (-) True LOC122328474
XM_043225536.1 mRNA downstream 272925 6994167 ~ 7003523 (-) True LOC122329304
XM_043224124.1 mRNA downstream 294487 6964742 ~ 6981961 (-) True LOC122328436
XM_043224119.1 mRNA downstream 350032 6871977 ~ 6926416 (-) True LOC122328429
XM_043225082.1 mRNA upstream 32247 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA upstream 32247 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA upstream 32247 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA upstream 32247 7310570 ~ 7342531 (-) True rgs19
XM_043225086.1 mRNA upstream 32247 7310570 ~ 7341537 (-) False rgs19
TU230379 other downstream 272961 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 279639 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 294659 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 409167 6864425 ~ 6867281 (-) False ccm2l
TU230387 other downstream 415800 6858015 ~ 6860648 (-) False ccm2l
unassigned_transcript_2580 other upstream 907574 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 907872 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 908494 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 908794 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 910490 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU955770 True 861 lncRNA 0.52 2 NC_048573.1 74172939 ~ 74173821 (+)