RNA id: TU230379


Basic Information

Item Value
RNA id TU230379
length 725
RNA type TUCP
GC content 0.54
exon number 5
gene id LOC122329304
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6994167 ~ 7003523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAGGAGATTGGGCCTGTCCTAAACAGggacacacatacaaacacacactcttgcaCACACAGCTAGCCATCAGGCTGGTCGATATGGACTATGAGCCCAAGCGAGCCAAGAAGGGCTTTGTAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGTCAGGCAGACAAAGGCAGTGTGTACCGCAGACCCCTTCACACTGTCCCCCTCTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTACGACTATGTGGAAAAGGAAGTCAAGTTCCTGGGACACTTGACTTGGGTGTCATGTTCCCTGAACCCGTCCAGCAGAGATGAGCTTCTGCAGCTTCTGGACACAGCCAGGAAACTGAGGGTTTTGCCTCTGAAGACCAGTGTGGAGCAGGACTGCATTCTCAGCCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGGGACAACGAAAAACTGCTGCTGAGAATCCCCACACATGAAATCGCTGCTGCCTCCTACCTGCGGGATGATGCACTGCACCTACTGGTGCTCAAAACTGgTTTGAATGTGGACACTGTACTAGCTGGTGACACTTTGGAGAACAGGCCCACTGGTTTGGAGAGCCGCAGACAAACTATAAGCAACACTGACCCCAGGCCTGCAGGGGGCACCATGGAGCGCCGCCACACCATCTGTGGTGTGGACTGGAAGCTCTCGTCCCGCCATGAGCCTAAACAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230378 lncRNA downstream 162019 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 164996 6835375 ~ 6835589 (-) True G155508
XR_006247875.1 lncRNA downstream 195666 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 375317 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 388061 6611993 ~ 6612524 (-) True G155435
TU230389 lncRNA upstream 60091 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 96821 7100308 ~ 7106154 (-) True G155597
TU230413 lncRNA upstream 116916 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA upstream 119442 7122929 ~ 7124586 (-) True G155606
TU230416 lncRNA upstream 121341 7124828 ~ 7305564 (-) True G155607
XM_043224124.1 mRNA downstream 18624 6964742 ~ 6981961 (-) True LOC122328436
XM_043224119.1 mRNA downstream 74169 6871977 ~ 6926416 (-) True LOC122328429
XM_043225551.1 mRNA downstream 133285 6858007 ~ 6867300 (-) True ccm2l
XM_043223998.1 mRNA downstream 143120 6838807 ~ 6857465 (-) True cables2b
XM_043224021.1 mRNA downstream 177553 6820936 ~ 6823032 (-) False rps21
XM_043224180.1 mRNA upstream 5410 7008897 ~ 7060251 (-) True LOC122328474
XM_043225559.1 mRNA upstream 84690 7088177 ~ 7091244 (-) True sox18
XM_043225082.1 mRNA upstream 307083 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA upstream 307083 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA upstream 307083 7310570 ~ 7342558 (-) False rgs19
TU230386 other downstream 3776 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 18796 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 133304 6864425 ~ 6867281 (-) False ccm2l
TU230387 other downstream 139937 6858015 ~ 6860648 (-) False ccm2l
TU230278 other downstream 177607 6773578 ~ 6822978 (-) False rps21
TU230401 other upstream 272961 7276448 ~ 7278323 (-) True G155596
unassigned_transcript_2580 other upstream 1182410 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 1182708 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 1183330 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 1183630 8187117 ~ 8187210 (-) True trnai-uau_8

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042693 True 463 mRNA 0.53 4 NC_007134.7 9035578 ~ 9054948 (+)
grasscarp (Ctenopharyngodon idella) TU133831 True 163 TUCP 0.54 1 CI01000021 4045284 ~ 4045446 (-)
mexican tetra (Astyanax mexicanus) TU133831 True 430 lncRNA 0.42 1 NC_035907.1 11404781 ~ 11405210 (+)