RNA id: TCONS_00042693


Basic Information

Item Value
RNA id TCONS_00042693
length 463
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_021482
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9035578 ~ 9054948 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCAGCCATCGGGCTGGTCAAAATGGACTATGATCCCAAGCGAACCAAGAAGGGATTCGTGTCTCCAATAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGACAGGTGGACAAAGGCAGTGTTTACCGCAGACCCCTTCACACCGTCCCGCTTTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTATGACTATGTGGAGAAGGAGGTCAAGTTCCTGGGACACCTGACATGGGTGTCCTGTTCCCTGAACCCATCCAGCAGAGACGAGCTGCTGCAGCTTCTGGACACAGCCAGGAAGCTGAGGGTTTTACCTCTGAAGACCAGTGTTGAACAGGACTGTATTCTCAGTCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGAGACAATGAAAAACTGCTGCTGAGGATCCCTACACATGAAATTGCTGCTGCCTCCTACCTGCGGGATGATGC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-248 Acts upstream of or within anterior/posterior axis specification; heart contraction; and heart morphogenesis. Is expressed in heart and notochord. Orthologous to human CCM2L (CCM2 like scaffold protein).

Ensembl:

ensembl_id ENSDART00000140455

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044657 lncRNA upstream 223924 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044781 lncRNA upstream 224001 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00042690 lncRNA upstream 335585 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044780 lncRNA upstream 1600262 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00044782 lncRNA downstream 341720 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044658 lncRNA downstream 810753 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00044783 lncRNA downstream 883297 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA downstream 883326 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA downstream 883326 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042692 mRNA upstream 20552 8989168 ~ 9015026 (+) True XLOC_021481
TCONS_00042691 mRNA upstream 235698 8797143 ~ 8799880 (+) True XLOC_021480
TCONS_00042689 mRNA upstream 335901 8679216 ~ 8699677 (+) False XLOC_021478
TCONS_00042686 mRNA upstream 1298859 7710447 ~ 7736719 (+) False XLOC_021477
TCONS_00042694 mRNA downstream 3051 9057999 ~ 9084866 (+) False XLOC_021483
TCONS_00042695 mRNA downstream 12183 9067131 ~ 9076161 (+) True XLOC_021483
TCONS_00042696 mRNA downstream 33243 9088191 ~ 9137648 (+) True XLOC_021484
TCONS_00042697 mRNA downstream 151402 9206350 ~ 9211297 (+) True XLOC_021485
TCONS_00042698 mRNA downstream 165488 9220436 ~ 9228578 (+) False XLOC_021486
TCONS_00042675 other upstream 2209776 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 2731304 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 5300569 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 8593226 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 8622919 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042706 other downstream 252626 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 563265 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 672462 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 1091604 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 1292929 10347877 ~ 10350429 (+) False XLOC_021499

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU133831 True 163 TUCP 0.54 1 CI01000021 4045284 ~ 4045446 (-)
tiger barb (Puntius tetrazona) TU230379 False 725 TUCP 0.54 5 NC_056721.1 7000585 ~ 7003487 (-)
mexican tetra (Astyanax mexicanus) TU133831 True 430 lncRNA 0.42 1 NC_035907.1 11404781 ~ 11405210 (+)