RNA id: TCONS_00042698


Basic Information

Item Value
RNA id TCONS_00042698
length 404
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_021486
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9220436 ~ 9228578 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACATCCGGACCCTTGCTCTTTCCTTTCCGCGTCGGCCATTTGTGTTAATCGACCGAGTTGGTTGACAGTCATCAATAAAAGCGAAGATGCAGAACGACGCTGGTGAATTCGTGGACCTGTACGTCCCTCGTAAATGctCTGCTAGCAACAGAATCATTGGTGCCAAGGACCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGTTACAGGCAGGTTCAATGGACAGTTCAAGACCTATGCCATCTGTGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCCTGAGGCTCGCAAAGACCGACAGCATTGTGGCCAAGTAATCTGAACACCTAAGTTGAAGGATGGGCTCTCAAAGTTTCtttggttaaaaaataaaaagtaaaatgaaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005840 ribosome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-1102 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21).

Ensembl:

ensembl_id ENSDART00000033663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044657 lncRNA upstream 408782 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044781 lncRNA upstream 408859 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00042690 lncRNA upstream 520443 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044780 lncRNA upstream 1785120 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00044782 lncRNA downstream 168090 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044658 lncRNA downstream 637123 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00044783 lncRNA downstream 709667 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA downstream 709696 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA downstream 709696 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042697 mRNA upstream 9139 9206350 ~ 9211297 (+) True XLOC_021485
TCONS_00042696 mRNA upstream 82788 9088191 ~ 9137648 (+) True XLOC_021484
TCONS_00042694 mRNA upstream 135570 9057999 ~ 9084866 (+) False XLOC_021483
TCONS_00042695 mRNA upstream 144275 9067131 ~ 9076161 (+) True XLOC_021483
TCONS_00042693 mRNA upstream 165488 9035578 ~ 9054948 (+) True XLOC_021482
TCONS_00042702 mRNA downstream 1853 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042701 mRNA downstream 1853 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042700 mRNA downstream 1853 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042703 mRNA downstream 1994 9230572 ~ 9273055 (+) False XLOC_021487
TCONS_00042704 mRNA downstream 29953 9258531 ~ 9285628 (+) False XLOC_021487
TCONS_00042675 other upstream 2394634 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 2916162 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 5485427 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 8778084 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 8807777 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042706 other downstream 78996 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 389635 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 498832 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 917974 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 1119299 10347877 ~ 10350429 (+) False XLOC_021499

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU133801 True 176 TUCP 0.45 2 CI01000021 3927790 ~ 3931056 (-)