RNA id: TU133801


Basic Information

Item Value
RNA id TU133801
length 176
RNA type TUCP
GC content 0.45
exon number 2
gene id G117733
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3837422 ~ 3931056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGGCCCTTTCTCTTTCCTTTCCGTGTCGGCCATTTGTGTTAATCGACTGAGCTGATTGACAGTCATCAAATAAAGTCAAGATGCAGAACGACGCTGGTGAATTCGTGGACCTGTACGTCCCCCGTAAATGCTCTGCTAGCAACAGAATCATTGGTGCCAAGGACCATGCCTCCATCCAAATCAACATTGCTGAGGTGGATAGGGCAACAGGCAGATTCAATGGGCAGTTCAAGACTTACGCCATCTGTGGTGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCCTGAGGCTCGCAAAGAACGACAGCATTGTGGCAAAGTAAGCTCCTGAACATCTAAATTTAAGGATGGACTCTGGAAGTTTCTTTGTAAAATAAAAAATTAAAATTGGATTCTTGTTTGTGTTTTCAATAGTGTGGGTGCATTAGTTAAAGACTGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134249 lncRNA downstream 101821 3824509 ~ 3825969 (-) True G118158
TU133919 lncRNA downstream 222093 3704249 ~ 3705697 (-) True G117850
TU133815 lncRNA downstream 318765 3607922 ~ 3609025 (-) True G117746
TU134142 lncRNA downstream 361344 3562589 ~ 3566446 (-) True G118062
TU134088 lncRNA downstream 480854 3446345 ~ 3446936 (-) True G118008
TU134294 lncRNA upstream 217834 4149552 ~ 4149784 (-) True G118202
TU134297 lncRNA upstream 222115 4153833 ~ 4154054 (-) True G118205
TU133910 lncRNA upstream 250181 4181899 ~ 4182478 (-) True G117841
TU134315 lncRNA upstream 271974 4203692 ~ 4204108 (-) True G118223
TU133905 lncRNA upstream 276044 4207762 ~ 4208067 (-) True G117836
CI01000021_03760052_03774483.mRNA mRNA downstream 153307 3759716 ~ 3774483 (-) True CI01000021_03760052_03774483
CI01000021_03748559_03755297.mRNA mRNA downstream 172493 3748353 ~ 3755297 (-) True CI01000021_03748559_03755297
CI01000021_03572797_03577241.mRNA mRNA downstream 350208 3572769 ~ 3577582 (-) True CI01000021_03572797_03577241
CI01000021_03438153_03448377.mRNA mRNA downstream 479413 3436760 ~ 3448377 (-) True CI01000021_03438153_03448377
CI01000021_03324720_03328120.mRNA mRNA downstream 598336 3324355 ~ 3329454 (-) True CI01000021_03324720_03328120
CI01000021_03973725_03974969.mRNA mRNA upstream 41721 3973439 ~ 3974969 (-) True CI01000021_03973725_03974969
CI01000021_04002889_04033476.mRNA mRNA upstream 70639 4002357 ~ 4033701 (-) True CI01000021_04002889_04033476
CI01000021_04035411_04049515.mRNA mRNA upstream 103471 4035189 ~ 4049515 (-) False CI01000021_04035411_04049515
CI01000021_04061478_04074988.mRNA mRNA upstream 129760 4061478 ~ 4074988 (-) True CI01000021_04061478_04074988
CI01000021_04102462_04141661.mRNA mRNA upstream 168946 4100664 ~ 4142025 (-) True CI01000021_04102462_04141661
TU133963 other downstream 883003 3044019 ~ 3044787 (-) True G117893
TU133731 other downstream 1035455 2891860 ~ 2892335 (-) False G117683
TU132929 other downstream 1214543 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 1593474 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 1717294 2209921 ~ 2210496 (-) True G116856
TU133831 other upstream 113566 4045284 ~ 4045446 (-) True G117762
TU134763 other upstream 818379 4750097 ~ 4767372 (-) True G118639
TU134934 other upstream 1222173 5153891 ~ 5154291 (-) True G118801
TU135394 other upstream 1593137 5524855 ~ 5530926 (-) True G119215
TU135448 other upstream 1681724 5613442 ~ 5613989 (-) True G119267

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042698 False 404 mRNA 0.48 6 NC_007134.7 9220436 ~ 9228578 (+)