RNA id: CI01000021_04002889_04033476.mRNA


Basic Information

Item Value
RNA id CI01000021_04002889_04033476.mRNA
length 2485
RNA type mRNA
GC content 0.50
exon number 11
gene id CI01000021_04002889_04033476
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4002357 ~ 4033701 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACTGCATGAGTCCTTCATTTTCCCTCTCTCTTCCTCACACAGAGCGCGCCTGATGCTTTATTTCAGACGCTTTATGACTCATCAGCCAATCAAATTCACGCATGCTCTATCTATTTACTAAAATCCCGTACTCTAAGCCAATCAAATAAGAGTAGGCGTGTCCGGATGAGTCGCGCCGGGGTAGAAACAGTATTGAGCATCAGCAGACGGTTTACTTGAGAATGGCGGCTGCTGCTTGCAGTCCGCAGAGTGCACTGAACCCATGCACTGGCAAACTGCACAGAGAACATCTGCGGAAAAGTAAAGATTCGCGGAGGAGACAAGCTGCGCTTTTATTTCTCACTAATATATCCCTAGACGGACGGCCTGTGCGGAACAATGCCAGCGCAGCGGGCCCCAGTGATGCCGAGTTTCAGTGCGCTGACATCGGCGCGACTGCGAGTGAACTGTCCGCTGCGGCAAGTACCGATGGGACCTTCTCCAGCCTCTCTGTCCCCAGACTCGGTTTGCTCAGTGTCCCGCCCATCCTGGTTCTGCCGTCGGATTCTGGGTTCAGTAACGTCGGGAGCACCGAGATGTTCCTGGAGAGGGAGAGAGGCTCGTTCTGCTCGCAGAGTAATCTCCTGTCCCCGTGCAGTCTACAGCCAACTCCGCTCGGAGCGCGGAAGTCTCCGACGCTGCTGTCCGTGCAGAGCTGCGGCTCCTCGCTGGACTCTCGACCGCGTCTTCAGCTTTTCTTTGCTCTCTTCTTCACACTCGCCTGCACGCAGGTGCGGTTCCTCGCCCTGGGTTATGATAACAGTAATTTGGATTCTGAGGGAGGGAGTCGCAACGCATCTGGTTCTCCTCGTCCACGCTCCATGAAGAAAAACCACTTTATTAAGAACATGAGGCAGTATGACACAAGGGGCAGCAGGATTGTGCTTATCTGTGCCAAAAGGTCTTTGTGTGCTGCCTTCTCTGTGCTGCCGTATGGAGAGAGCTTCCACATCAGATTGCAGGCCTTACCAAGCCTCTCTGAGGATGAGTCCCCAGCAGTGTGGGCATCTGGCATCCAGCTGTTGCTTGTTTTCAGTTTGTTGGCCTTAGCAGGCTGCTCTGGAAGACAGCAGGCCTTCCTGTGGGCGAGCCCAAGGTTTGACCCTCTTCTGGACGCTCAGCGGCGGAGGCACTCATCCGGAGGAATATCCACCACCCTGGAGATGCTTCCCGGGCTGGAGGGGGTGGAGCTGGGCATGTACGGCAGGACGGTGTCATACGCTCAGTTCCTGTACCCCACTAACGCTCTGGACCGCCACAAGCCCTCAGTGGATCTCACTCTACCCCTGCCCTATTCCAGAAACAGCATCCCACGCAGTTTTCCTCCCTCTCGCCTCAACAGCACTGTCGGTCTGGATCTGGGCCTTGAAGACACTGAATATGACCCTAATATGCTCAGTGACCCCCAGTGGCCATGTGGAAAACACAAAAGAGTGCTCATCTTTGCCTCATACATGACGACAGTAATAGAGTACGTCAAACCGTCAGATCTGAAGAAGGACATGAATGAGACTTTTAAAGAAAAATTCCCCCACATCAAACTCACACTGAGCAAAATCAAAAGTCTGAAGAGAGAAATCCGTTCAGTGGGGGAGGAGTCTTCCTTGCAGCCAGTCACCATAGCCATGGCATTTGTGTACTTTGAGAAGCTGGTCCTACAGGGACGTCTCAACAAGCAGAACAGGAAGTTGGTGGCGGCTGCGTGTCTCCTACTCGCTGCCAAGATCAGCAGCGACCTGAAGAAACAAGAGGTCAAACAACTGATTGACAAATTGGAGGAAAGGTTCCGGATTAGCCGTCGGGAGCTGATTGCTTTTGAATTCACCATCTTGGTAGCGCTGGAAATGGCACTTTACCTTCCGGAGAGCAAAGTCATGCCCCACTACCGTAGACTGGTGCAGAAGACCTAACGTGTGTAGAGCAGAGGGATCTGGGCAGTCATGGACATGCAAATGAGATGCGTAAAGCAGCCCAAAGTGTGCGACTCTGCGTTCCCGTCGTTGCAGTTTCAGGTATCAGAGTGAATACACATCAACACGAAGCTCTAAGGAAGAACTGACATCCCAAATGATGCTATTTATAGCAATCGGGCCAGCGGCATTTGTTTTCATGGCTGTCTGTTTTTGTGACCACCATAGGAATACTGCTGAGGAAAACAGTAAGGATCTTCTTTTATTGAAAACAGAGGGTTTTTAACTCTCAACCGACAAGGGAAGAGTTTAACTCCTACTTCACTTGTGTGAAATGTACAAGTGTGCATGCATGTTTTTAACATTCCATATGTATTTACCAAAAATAACTTTTATTTAATGTAGACTTCTCCTTTTGTACAGAACCACCTACCATTCACTGTAACACTAAAGCACTTTTTTAAACTATACATTTTTTTAATGTAAACCTTATGCAATAATAATAAGAATATAATAATTAGCACAGATTAAA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134249 lncRNA downstream 176388 3824509 ~ 3825969 (-) True G118158
TU133919 lncRNA downstream 296660 3704249 ~ 3705697 (-) True G117850
TU133815 lncRNA downstream 393332 3607922 ~ 3609025 (-) True G117746
TU134142 lncRNA downstream 435911 3562589 ~ 3566446 (-) True G118062
TU134088 lncRNA downstream 555421 3446345 ~ 3446936 (-) True G118008
TU134294 lncRNA upstream 115851 4149552 ~ 4149784 (-) True G118202
TU134297 lncRNA upstream 120132 4153833 ~ 4154054 (-) True G118205
TU133910 lncRNA upstream 148198 4181899 ~ 4182478 (-) True G117841
TU134315 lncRNA upstream 169991 4203692 ~ 4204108 (-) True G118223
TU133905 lncRNA upstream 174061 4207762 ~ 4208067 (-) True G117836
CI01000021_03973725_03974969.mRNA mRNA downstream 27388 3973439 ~ 3974969 (-) True CI01000021_03973725_03974969
CI01000021_03902018_03931315.mRNA mRNA downstream 69849 3901897 ~ 3932508 (-) False CI01000021_03902018_03931315
CI01000021_03760052_03774483.mRNA mRNA downstream 227874 3759716 ~ 3774483 (-) True CI01000021_03760052_03774483
CI01000021_03748559_03755297.mRNA mRNA downstream 247060 3748353 ~ 3755297 (-) True CI01000021_03748559_03755297
CI01000021_03572797_03577241.mRNA mRNA downstream 424775 3572769 ~ 3577582 (-) True CI01000021_03572797_03577241
CI01000021_04035411_04049515.mRNA mRNA upstream 1488 4035189 ~ 4049515 (-) False CI01000021_04035411_04049515
CI01000021_04061478_04074988.mRNA mRNA upstream 27777 4061478 ~ 4074988 (-) True CI01000021_04061478_04074988
CI01000021_04102462_04141661.mRNA mRNA upstream 66963 4100664 ~ 4142025 (-) True CI01000021_04102462_04141661
CI01000021_04183864_04186516.mRNA mRNA upstream 149478 4183179 ~ 4186556 (-) True CI01000021_04183864_04186516
CI01000021_04191779_04194388.mRNA mRNA upstream 157905 4191606 ~ 4194399 (-) True CI01000021_04191779_04194388
TU133802 other downstream 70639 3837422 ~ 3931056 (-) True G117733
TU133799 other downstream 70639 3927790 ~ 3931056 (-) False G117733
TU133801 other downstream 70639 3927790 ~ 3931056 (-) True G117733
TU133963 other downstream 957570 3044019 ~ 3044787 (-) True G117893
TU133731 other downstream 1110022 2891860 ~ 2892335 (-) False G117683
TU133831 other upstream 11583 4045284 ~ 4045446 (-) True G117762
TU134763 other upstream 716396 4750097 ~ 4767372 (-) True G118639
TU134934 other upstream 1120190 5153891 ~ 5154291 (-) True G118801
TU135394 other upstream 1491154 5524855 ~ 5530926 (-) True G119215
TU135448 other upstream 1579741 5613442 ~ 5613989 (-) True G119267

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042696 True 1764 mRNA 0.53 9 NC_007134.7 9088191 ~ 9137648 (+)