RNA id: TU133963


Basic Information

Item Value
RNA id TU133963
length 769
RNA type TUCP
GC content 0.52
exon number 1
gene id G117893
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3044019 ~ 3044787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTATCGAGAGGCATCCAGCTGTTTGACAGCGCGTCAATCCTGCTCTTGTACTCGGTGATTTTCTTCTGAAATGTGAGCGCTGTAATGTGCAGCTCGCAGTGGAGCGCGGAGAGTTTGGAGAGGAGAGACTTCTCTCTCTTACTGAAGCTCAGGGACTGACGCTTCAGCTCTTTCTCCAGACTCAGCACTTTGGTTTGGAGGAGACCGCTGCGTGTCTTAAGTGCTTGGAGACAGCTGTGGTCCTCCGACCTCTCCTTGAGTGTCAGCACGAGTCCACATCCATTTTTACAGAGCTCTACCGCCCTGTGCTCGCATCTCTCCCGCATGTGTGAATCCACATCCTTCAGGTTGAGCACCGCGTCGCATCCTTCATTCCTGCATCTGACCGGAGAGAAGTCGCACATCTCCGCGTGCTCTGAAAGATGCTGGAGCTTCATTACCCGGTTGCAGCCTCGTTTATGGTGGTCGCACTTGATGTCCAGCTTAAAAATGAGGTTTTTTAGGGGCAGGACGTGGTTCAGCTCTTTGGTGGTGATCTTTTGGCACAGGACAGGGCAGCTGTTGACTTTGGAGAGCCACTGTAGCGCGCACGCGGCGCAGAAGACATGTCCACACGGAGTGCTGAGAGGATCCTCTAAAACTTTCCCACACAGTTTACAGATTAAGTCCGGATCCACAAAACCCTCAAAACGGTCTAGATCAAAGCCCATAGTCTTGACATGGAGTACGGGAACGACTCCGAAACAAGGAAAGAGCTGTCTTCTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133953 lncRNA downstream 17769 3025780 ~ 3026250 (-) True G117884
TU133951 lncRNA downstream 23735 3020069 ~ 3020284 (-) True G117882
TU133950 lncRNA downstream 30928 3012638 ~ 3013091 (-) True G117881
TU133728 lncRNA downstream 151660 2892088 ~ 2892359 (-) False G117683
TU133729 lncRNA downstream 151684 2892088 ~ 2892335 (-) True G117683
TU133966 lncRNA upstream 1411 3046198 ~ 3046429 (-) True G117894
TU133968 lncRNA upstream 6711 3051498 ~ 3051844 (-) True G117896
TU133971 lncRNA upstream 10491 3055278 ~ 3055643 (-) True G117899
TU133973 lncRNA upstream 13870 3058657 ~ 3058885 (-) True G117901
TU133974 lncRNA upstream 18029 3062816 ~ 3063059 (-) True G117902
CI01000021_02791299_02829637.mRNA mRNA downstream 214140 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_02620174_02687913.mRNA mRNA downstream 356106 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 513126 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_02503590_02509554.mRNA mRNA downstream 534465 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 550590 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_03088285_03098959.mRNA mRNA upstream 43238 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 139779 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 201224 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
CI01000021_03267771_03288743.mRNA mRNA upstream 222515 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
CI01000021_03319954_03323293.mRNA mRNA upstream 274323 3319110 ~ 3323340 (-) True CI01000021_03319954_03323293
TU133731 other downstream 151684 2891860 ~ 2892335 (-) False G117683
TU132929 other downstream 330772 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 709703 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 833523 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 1681215 1361878 ~ 1362804 (-) True G116730
TU133802 other upstream 792635 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 883003 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 883003 3927790 ~ 3931056 (-) True G117733
TU133831 other upstream 1000497 4045284 ~ 4045446 (-) True G117762
TU134763 other upstream 1705310 4750097 ~ 4767372 (-) True G118639

Expression Profile