CI01000021_02503590_02509554 (TTLL9)


Basic Information

Item Value
gene id CI01000021_02503590_02509554
gene name TTLL9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2502568 ~ 2509554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02503590_02509554.mRNA
ATGGTTAGTTTTGGACATGTCCAAGAATAAGCAGACAGCTGGACATAAAGGTGCCTACAATTCCCAAAGGAAAAAGGAAGGGGAGGGAAGGAGTTGTATAAAGTACAGATGTGGCCTGACCAACACCATACAGGATGTCCTAAACCAGAGACCAGGTTGGGTAGAAGTGAAAGATGATGGCGAGTGGGACTTTAACTGGTGTGATGTTGGGTGGTTGAGAGAGAACTTCGATCACTCATACATGGAGGAACACGTGCGGATATGTCACTTCCGCAACCACTACGAGCTGACCCGTAAGAACCTGATGGTGAAAAACCTGAAGAGGTATAGAAAAACTTTAGAGCGGGAGGCTGGGCGTTTAGAGGCGGCCAAATGTGACTTCTTCCCATGTACGTTTGTGCTGCCCAGTGAGTATCACATCTTTGTGGAAGAGTTTAAGAGAAGCCCAGGGAGCACCTGGATCATGAAGCCTGTGGCACGATCACAAGGAAAAGGAATTTTTCTGTTTCGAAAACTCAAAGATATCATAGATTGGAGGAAGGATGGGACCCGCTCTGAAGAACAGAAAGATGAGGCTCAAGTTGAGAGCTATGTCGCTCAGCGCTACATTGAGAATCCCTACCTCATAGCTGGGAGGAAATTTGACTTGAGAGTCTATGTTCTTGTAACATCAGGTTGTAAGTGGCAAATGCAACAGCTACGCTGTTATCTGACTGCTAAGCATGGTTTCGAGACAGTGCAGACTCTGTTTAAAGAAGTTGACAACATATTTATTCGCAGCCTGCTTAGTGTTCAGAAGACCATCATCAATGACAAACACTGTTTTGAGTTGTACGGATATGATATACTTCTGGACCAGGATTTAAAGCCGTGGCTAATTGAAGTGAACGCTTCACCCTCCCTCACAGCCAGCAGTCAGGAGGACTATGACTTAAAATACAGACTGCTGGAGGACACCTTGCACATTGTAGACATGGAGGGCTGTCTGACAGGCAAGGAGAAGAGGGTTGGCGGATTTGACCTAATGTGGAACGATGGACCTGTCTACACGGATGTTGGTCTAGAGGCTCTGGGTTGTTCATGCCTCGTGGCAAATACACACCTTGGTTAGTGTCTTGTACTGCCTAATTGGAGATCTGGGCCTATAGTGCATTCAATGAGCCTGTTCTACACCCGTAAGATCTTCGTTCATCTTCGGAACACAAACTAAGATATTTTTAATGAAAATCAAAAATGAAAAACAAAAATACTGAATTGAAACAAGATTCGAAGCAGTGTTTTGAAATCTGCCATCACTAGATATTGTTGAAAAGTTTTGTTTTTTTGGCGCACAAAAATTATTCTCGTCCCTTTATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTTTTGAGTACCTTTCTGGATCTTGATAAGTTCGGTGGCATTGCTGTCTATGGAGGCCTCACTTAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACAACATGAGGGTGAGTAATTAATAAAAGAATTTTCATTTTTGGGTGAACTAATCCCTTAAAAAGATGTCATTGGTAACAGGGTTGCAAAGAGATTACTGCTACTTTTCATGCTGCTTGCTGTTACACATCTAAGTTTTCTCTCTTATGAAGATGGGATTTGCACCTTTATTGCCTAAAAAATAATGAAAAACCTCTTTGTGGAAAGTGTCACATCACATATAGCATTTAGTAATGTCTCCTGATGTAAGTACAAATGCTTTTTGCTCTCTTTGTATTTACACAGGCTGTGTGAATGATCGCCAGAAACAGCTTCAACATCTTCTAAAGCCTTTCCCAGGACAGAAGAGAACATGACAACTTGCAAATGACATCTACTGTAATCAGTGTGAAAAACTGCATGACATCCCACTAATACCCACAATGCTTATAATATTTACCTAAGGTTTCAGATGAGTGTCAATATGAGTATTTAAGTACCTAGAAGATATAGCAAAGTCACTGAAAATTTTCATTCGCATGCTGAAAATTGGTCTGTCATTGTTTACTGATTTATAATGAAATTATAATAACTGTATAAATTTCTGGATTCAAATAAA

Function

symbol description
ttll9 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9).

NR:

description
Wu:fb75c08 protein, partial

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16603 TTLL9; tubulin polyglutamylase TTLL9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02503590_02509554.mRNA True 2133 mRNA 0.41 11 2502568 2509554

Neighbor

gene id symbol gene type direction distance location
CI01000021_02492524_02493429 PPP1R3DA coding downstream 9139 2492137 ~ 2493429 (-)
CI01000021_02458161_02471710 NA coding downstream 30858 2458154 ~ 2471710 (-)
CI01000021_02386235_02398978 PIGT coding downstream 103590 2385586 ~ 2398978 (-)
CI01000021_02335864_02337990 NA coding downstream 161308 2335363 ~ 2341260 (-)
CI01000021_02317457_02320931 HAUS8 coding downstream 180905 2317457 ~ 2321663 (-)
CI01000021_02522404_02530893 NA coding upstream 12499 2522053 ~ 2530893 (-)
CI01000021_02620174_02687913 CNTN3A.1 coding upstream 110014 2619568 ~ 2687913 (-)
CI01000021_02791299_02829637 CHL1A coding upstream 280931 2790485 ~ 2829879 (-)
CI01000021_03088285_03098959 NA coding upstream 578471 3088025 ~ 3098959 (-)
CI01000021_03184886_03225117 TNS2, TNS2A coding upstream 675012 3184566 ~ 3231042 (-)
G116900 NA non-coding downstream 171492 2330683 ~ 2331076 (-)
G116891 NA non-coding downstream 172137 2330226 ~ 2330431 (-)
G116889 NA non-coding downstream 172694 2328063 ~ 2329874 (-)
G116872 NA non-coding downstream 251283 2250802 ~ 2251285 (-)
G116957 NA non-coding upstream 25514 2535068 ~ 2535384 (-)
G116962 NA non-coding upstream 83197 2592751 ~ 2594183 (-)
G116959 NA non-coding upstream 99020 2608574 ~ 2616059 (-)
G117104 NA non-coding upstream 237524 2747078 ~ 2747812 (-)
G117136 NA non-coding upstream 357649 2867203 ~ 2867432 (-)
G116893 NA other downstream 168252 2331314 ~ 2334316 (-)
G116856 NA other downstream 292072 2209921 ~ 2210496 (-)
G116730 NA other downstream 1139764 1361878 ~ 1362804 (-)
G116997 NA other upstream 203231 2712785 ~ 2713247 (-)
G117683 NA other upstream 382306 2891860 ~ 2892359 (-)
G117893 NA other upstream 534465 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1327868 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 1535730 4035189 ~ 4049592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008188 ttll9 coding CM030123.1 CM030123.1 45228642 ~ 45232701 (+)