CI01000021_02791299_02829637 (CHL1A)


Basic Information

Item Value
gene id CI01000021_02791299_02829637
gene name CHL1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2790485 ~ 2829879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02791299_02829637.mRNA
AAAATATTGTAAAACACTTAAGACTACAAAGCAAACTTCAAAGAAACAGCTTGCTAAATCTCCTCTCAGTTTCGCTGTAGAAGGATTTATGACAATTTGTTCTCTGTTCTGACTCTTGTAGTCTTTTATTTCTCTTTAGATCTTTTCCTTGGAGGAGTCAGTGAAGAGCTCTTGCTAAAAGAACAACTTTCCAAGGGTGTTTTCAGCATTTTCTTTACCTTTGTCCTTATCTGCTGGCTGGGATGCTGCTAAGGGGGCTCAGGAGCCTAAGTGTCGGGCTCCTGTCGGCCTTCTTTTCTACTACCTTTGGTCTTTATTTCCCTCCTCACGTGGAGCAGCTGCCGACCATCACCGCTCAGACCTCGGGCTCTCTCATTGCCTTGCCATATGATGAGAACTTCCTGTTCAAGTGTGAAGCCAAAGGCAACCCAAGACCTACGTACCGCTGGACAAAAGATGGGATGGATTTTGACCCACATAAAGACTCTCGGCTCATTAAAGAAGAAAGTAGTGGGACTTTTGTGATACCAAACAATAAAGATACAGTGAAATACCAGGGAAAGTACAGATGTTATGCCTCAAACAAGCTTGGAACTGCAATATCAGAGGAATCAGAATTTATTGTACCTATGGTTCCCAAGTTTCCCAAAGAGAAGACAGAGCCAGTGGTGGTCACAGAGGGTGATTCAGTGATTTTGGAGTGTAACCCACCACAAGGGATTCCACCATGGCAGCTGTACTGGATGACCAATGATCTTCGTCACATTGAGCAAAATGAGAGGGTGTCCATGGGCCTCAGTGGGAATCTGTACTTCTCTAATACACTGGTGTCAGACAGCCATGATGACTACTGCTGTTTTGCCTCCTTTTTCAAGATACGCACAATTGTTCAGAAACCCAGCATGGTCCTGAGGGTCAAGCCAATAAATTCAACCCAAGGAGATGATGGCATCAAGAGTGTTCAGGAGAGAAAGCCGAACATGTTGGTTCCCTCCAGTCTTTCAACGACATACCTAAAAAAGGGAGACGAGCTGGAGCTGGAGTGTATCGCAGAAGGACTACCTACACCAGAGGTAGAATGGATCAAGATGTCGGATAATTTACCGAAGCGCTCACATATCAAAAACTTTGGAAAGCTTCTGACTATACCTGATGTCACAGAACAGGATGAAGGGAAATACATGTGCAAAGCCAAGAATGCTCTTGGTGAAGCTGTGCATCATTTCATTGTTGTTGTGGAAGAGCCGCCCAGCTGGCAGGAGGAGCCAGTGAAGAGTCAGTTAGCAGAAATTGGATCTGACATCCACATCAAGTGTTCTGCTACAGGAAAACCACAACCCACAATCACCTGGAAGAGAAACGGCCAGCCCCTTGATGATTTCCCTTCTACCAATCACCAAGTGCTTGATGACAAAATAATCATACTCCGAGCGGAGCAGAGAGACACTGCAGTGTACCAGTGTGAGGCCTCCAACAAACATGGGACCCTACTTGCCAATACTAACGTGCTTGTCATGAATCATCCTCCTTTGATTCTGACACGGAATTATCTGGAGTACGCAACCATGTTAGGCAAGAGTGTGATGATGGACTGCAAAGTCTTTAGCTCACCACCTGCCACCCTTAACTGGAGAAGAGAAGACCCAGAGGGCTCTGTAGATGGAGAGAGATATTCTCTCCTGAAGAATGGCTCCCTGCAGATTCACAAAGTGGAGATGGAAGATATGGGCCAGTTAGCCACCTTCCTTAATCAAAAAGCTTTTTGTTTCCTAGTCATTACTGAAACTAAAGGCCTGCTGTTGATAGATTCAACTAGGATTGTAGAAGCTCCCCAAGACATGAAGGTCAAAAGAGGATCTATGTTCGAGCTGGAGTGCCAGGTGGAGTGCGACCCCACCCTCAGACGAGAGCTGGAGATCTTGTGGCTAAAAGATGAGATAAATATCCTCTCTAACTTCTCAGAAAGATATTTCGCAGAAGATGGAATTCTCCAGATTGTCAATGTGAGCAACAGTGATCAAGGGAATTACACCTGCATTGTTCGAACATCACTGGACCAAGATACAGCTTCTGCTTACATAACCGTGTTAGACGTCCCTGATCCACCGGTTCAACTGACGCTCACTGATCTGAAAGACCGCAGTGTGAGGGTCAACTGGGCAGCCGCCAGTGATCATAACAGTCCCATAACAGAGTTCATCATCCAGTATGAAGAGAACCACTGGGAACCAGGAAAGTGGAAGGAGCTTCTACGAGTGGCTAGCAGCCAGTTCTCAGCCCCCTTGACGCTCTACGGCCACATTAACTACCGGTTCAGAGTCATCGCTGTCAATGCTATAGGGAGAAGTCGTCCCAGCATGCCCTCTGAAAGATATAAGACACCTCCTTGTGCTCCCGACAGGAACCCAGAAAACATTAAGATTGAGGGTCACCTGCCACATCAGATGGACATCAGCTGGGAGCCGCTCTTGCCTGTGGAGCACAACGGTCCCGGTCTGGAATACAAACTGAGCTACAGACTCCTGGGTGTCGAGGACAGTTGGAAAGAACAGATGGTGAAGAGACACTCCTTTGTGGTGCGAGACACCCCAACGTTCGTCCCCTACGAGGTCAAGATCCAGGCCTTCAACCACCATGGGTGGGCACCAGAACCCCGAGTGGTGACTGGTTATTCCGGGGAAGACCTGCCCTTGGCACCTCCCGAAGACGTAGCTGTTGAGGTGTTGAACTCTACACTACTGAGGGTCAGCTGGTCTCAAGTGCCTCAAACCGCCCTGAGGGGCCATCTTGGAGGATACACTGTGCACTGGTGGCAAACTCAAAGTCTGTTGCCCTCTAAGAGAATTCCCTCAGAGAGACAGTCTCTCACCATCCCTGGAAACAGGAGTCACACCATGGTGCTGGGACTGAAGCCATTCTCTGAATATAGCCTGACTGTCAATGTCTTTAACCGGAGAGGGAATGGGCCCAGCAGCATTCCTGAGAAACCACCCATCCTGAGAGCCACAAACTTCCAGAAAGACTCAATCACGTTGGTGTGGGCGCCTCCACACGAAGTTAACGGTTTTCTCACGGGATACTTGCTGCAATACCAGACAGTTAATGATACTCTGGGTGAGCTGAACTCTGTAAACATCAGTGCACCAGATACTACACAGTGGGTCTTGCGTGATCTACAGGAAAAGAACTCGTATAAGTTCTACCTGAGAGCATGTACGCAAGTGGGCTGCGGATCAGCCATCAGTGAGGAAGGAAGCACCATCCTTGAAGCAGAGCAACCTTTCTCTTTCACCTCACCTAATACAGACACTCCTTTTGTCAATGCCACCTTTCCTACCTTAGTTGTTCTCAACATATCCACCTTCGTAAATGAGACCTCTGCAAGAATCAGCTGGAGAACCAGTGGAGAACGGTCTGATTTACAGCTCTATGTTGCAATAATGAATCACCGTGATGGTATCTGGCAACTTTCAGAGGCTTTAAATACATCTAAAGGTTTCCACCTCATTGAAGGGCTCAGCCCAGGAACTGTGTACACAGTCCGGCTGCAGGCTTCACGCAGGGTTGATGTCCCTAGCATTTTTGAAGAGGTTTTCAAGACTAGGAAAGCGTCTAGTAAACAAGCGGGGGGACCCCAGGAGTGGTTTGTGGGGATGATGTGCGCGGTGGCTTTACTAACTCTGCTTGTCCTCATCGGCTGTTTTGTGCTGAAGAACAAAGGCGGCAAGTATGCAGTGAAGGAAAAGGAGGATTCTCCTGCTGATCCGGAATCTCACGGCATGGGTGAAGAGACCCCCGGCGAGTACAGTGATGATGAGAAGCCGCTGAAGAGCAGCCAACGATTGTTCAGAGACATCAAAGAGGATGACAGCAGTGAAGACTGCTCTATGACATCAGAGGACGAGGACTGCGAGTTCAACGAAGACGGGTCGTTCATTGGCGAGTATTCGGGATGCAAGCGCAAGGAGTCAACGGAGGTGAACGGACACGCCCCTGTGACTTCCTAATGCTGGTTCAATCTTATGAACTTTTATACAGTTTTAACAGGGAAAAAAGAAATGTTTGTTTGTATGATGTGCCTTGAATGTGCCTATGTTTTGTAAGAGTTTTGCACAAATGGCCACTTCTTTACAGTATTAATATGAAGGGTGATGACAGGTTATAGTTCAGCACAACATGAAAATTATGCCATTATTTACAGTACTCATCGCCATGTTGTTTCAAACTCAAATAATGGCTTTCTGAGATGTTTAGCAGAGTATTCAAGATGCTCTTTCCATACAAAAATTAAAAAGTAAATAGGGCGGCAAAGCTCCAAACATATGACTCATTAGCTATGTTCAAAAAGCCTTTCATATGATATGAAATTTAAGTCATTACTTGCTGATAATCTGCTGCAATTCTCAAATCTCAATCACATTTGCACCATATTTGAATATGTGCAAATGTGAATGAGATTTGAGAATTGCAGCAGATACCATGGTGGTATGGGTAGATTTAAGGGTGGGTATATCTTAACCAACCCTTAAATCTACCCATACCACCAAATCTGTCCTAACCTTACCCACCTCAATAGCAGCACAAGTGTTTTACAATACAACATAAACACAATAAGTATAGATTGTACATAATTATTATTTTTTATATAAATACATGGTAGTTACATAAAAGACACCTAATATAAAGTGTGACCTGAAACATTATTTGCAGGTTTGCCCAACAACAAAACAAACAGGTTTGTGCACCTTAGAATTAATGTAGATTACACGTTTGCGGTTGGATTAGGAAACGTTTTCACTTTTCCTGCTGAAGAAAAATAAA

Function

symbol description
chl1a Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like).

NR:

description
camel

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06758 CHL1; L1 cell adhesion molecule like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02791299_02829637.mRNA True 4821 mRNA 0.46 28 2790485 2829879

Neighbor

gene id symbol gene type direction distance location
CI01000021_02620174_02687913 CNTN3A.1 coding downstream 102572 2619568 ~ 2687913 (-)
CI01000021_02522404_02530893 NA coding downstream 259592 2522053 ~ 2530893 (-)
CI01000021_02503590_02509554 TTLL9 coding downstream 280931 2502568 ~ 2509554 (-)
CI01000021_02492524_02493429 PPP1R3DA coding downstream 297056 2492137 ~ 2493429 (-)
CI01000021_02458161_02471710 NA coding downstream 318775 2458154 ~ 2471710 (-)
CI01000021_03088285_03098959 NA coding upstream 258146 3088025 ~ 3098959 (-)
CI01000021_03184886_03225117 TNS2, TNS2A coding upstream 354687 3184566 ~ 3231042 (-)
CI01000021_03246184_03250332 NA coding upstream 416132 3246011 ~ 3250332 (-)
CI01000021_03267771_03288743 EIF4BA, EIF4B coding upstream 437423 3267302 ~ 3288743 (-)
CI01000021_03319954_03323293 NA coding upstream 489231 3319110 ~ 3323340 (-)
G117104 NA non-coding downstream 42673 2747078 ~ 2747812 (-)
G116959 NA non-coding downstream 174426 2608574 ~ 2616059 (-)
G116962 NA non-coding downstream 196302 2592751 ~ 2594183 (-)
G116957 NA non-coding downstream 255101 2535068 ~ 2535384 (-)
CI01000021_02335864_02337990 NA non-coding downstream 454016 2335363 ~ 2341260 (-)
G117136 NA non-coding upstream 37324 2867203 ~ 2867432 (-)
G117139 NA non-coding upstream 40066 2869945 ~ 2870273 (-)
G117683 NA non-coding upstream 62209 2891860 ~ 2892359 (-)
G117881 NA non-coding upstream 182759 3012638 ~ 3013091 (-)
G117882 NA non-coding upstream 190190 3020069 ~ 3020284 (-)
G116997 NA other downstream 77238 2712785 ~ 2713247 (-)
G116893 NA other downstream 456169 2331314 ~ 2334316 (-)
G116856 NA other downstream 579989 2209921 ~ 2210496 (-)
G116730 NA other downstream 1427681 1361878 ~ 1362804 (-)
G117893 NA other upstream 214140 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1007543 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 1215405 4035189 ~ 4049592 (-)
G118639 NA other upstream 1920218 4750097 ~ 4767372 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021506 chl1a coding NC_007134.7 CM002907.2 11285662 ~ 11452312 (+)