CI01000021_02492524_02493429 (PPP1R3DA)


Basic Information

Item Value
gene id CI01000021_02492524_02493429
gene name PPP1R3DA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2492137 ~ 2493429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02492524_02493429.mRNA
ATGGCCTGGTCTTTGGGATGTTGCCATAAAGATACACCCCTCGAAGAGATGAATGCTGACCTATTTTTTACCACGGTATCAGATGGCTCAAAAGAAAGTTCCACACCGATGTTGCAGGACATGACCCGCTCAAAAACGGACAGCGGGAGGAAGCCAGTTAAAATTCGGCCACCTAGCCCGAGAACCACTCCAAGGCAAACTGCAGGCCGCAGCCTGTCTTGTGAACCCCCAACCAAATCCATCATCCAGAGGCGGACTCAGTCCCTTCCATCTCCATCAGAGAGAAGAAAGCTTAGTCGCAGAGCCAGCGTCCGATTTGTGGACTCTTTGGGGTTGGACCTGGAAAATGTCAAGGTTTTTAAAAGCGGCGAGGACCCGTTTGTCCCAGAGCATGTTCTCTTCCGACTGTTAATGAATGCAGAGCTAGCCTCGAGTAAGAGGATGGAGATATCCTTACCATATTTGAAACCCATGTTCTCTGTCCAGCCGGGCGAATGTTCAAACTTCATGGATCGTCTGTGTTGCCAACAAGTATGCCTGGAGCGGGTTTTGTGCTACGAGCCTGGCATTATAGGGATTGTTCAAGTTGTAAATTTGGCTTTTGAGAAGGAAGTGAGTGTTCGCTATTCCTTTACAAACTGGAAGAGTTGCTCAGAAACCAAAGCTTACTGGGTTTCAAGCAAATTTATTTCAAACGGGCCCTGCTGTGACACTTTTCGATTTCATCTTCCCGTTCCTCCATTTATCCTTCACCCTGGGGCTGTGCTGGAGTTTGCGATTTGTTATAAAGTAATGGGCACTCAGTTTTGGGATAACAATGGTGGGCAGAATTACAAATTGACCTGTCAGAGTTACAACCTGCCTGTGCCGAAGGAATGTGAAGACAGCATGATACACTTTATCTGAGGACACTGAAAGTTAGATGAAACTTTTTTTAGAGCACTATTTTCACTTTTTCACTTTACTTGCACCCCACCAGCATTTTCACTGCGTGATATATATTGCTAAGCATCTGGAGGTCTTGCCATTGCACATTTCCTTTGTGAATAATAATTTGAAGCCATGTGAAATATGAGATTTTTAACTGTGATTTGTGACTGTTTAACTGGACTGTAGCACTGAAAGTATTACTGTATGTTGACTTTAATAATGTAATATAGATTCAAAAAGTGCCTTTACTGTATTTTCTACATTTCAGATGTGCACATATTTGTGTGAGGATTTTATTGTCACTATGTGGTACAATTTCAAAATACTTGAGTATATTGTAAACACAGATGTTGATGAAATAAA

Function

symbol description
ppp1r3da Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3D (protein phosphatase 1 regulatory subunit 3D).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02492524_02493429.mRNA True 1293 mRNA 0.43 1 2492137 2493429

Neighbor

gene id symbol gene type direction distance location
CI01000021_02458161_02471710 NA coding downstream 20427 2458154 ~ 2471710 (-)
CI01000021_02386235_02398978 PIGT coding downstream 93159 2385586 ~ 2398978 (-)
CI01000021_02335864_02337990 NA coding downstream 150877 2335363 ~ 2341260 (-)
CI01000021_02317457_02320931 HAUS8 coding downstream 170474 2317457 ~ 2321663 (-)
CI01000021_02309119_02315738 NA coding downstream 176399 2309024 ~ 2315738 (-)
CI01000021_02503590_02509554 TTLL9 coding upstream 9139 2502568 ~ 2509554 (-)
CI01000021_02522404_02530893 NA coding upstream 28624 2522053 ~ 2530893 (-)
CI01000021_02620174_02687913 CNTN3A.1 coding upstream 126139 2619568 ~ 2687913 (-)
CI01000021_02791299_02829637 CHL1A coding upstream 297056 2790485 ~ 2829879 (-)
CI01000021_03088285_03098959 NA coding upstream 594596 3088025 ~ 3098959 (-)
G116900 NA non-coding downstream 161061 2330683 ~ 2331076 (-)
G116891 NA non-coding downstream 161706 2330226 ~ 2330431 (-)
G116889 NA non-coding downstream 162263 2328063 ~ 2329874 (-)
G116872 NA non-coding downstream 240852 2250802 ~ 2251285 (-)
G116957 NA non-coding upstream 41639 2535068 ~ 2535384 (-)
G116962 NA non-coding upstream 99322 2592751 ~ 2594183 (-)
G116959 NA non-coding upstream 115145 2608574 ~ 2616059 (-)
G117104 NA non-coding upstream 253649 2747078 ~ 2747812 (-)
G117136 NA non-coding upstream 373774 2867203 ~ 2867432 (-)
G116893 NA other downstream 157821 2331314 ~ 2334316 (-)
G116856 NA other downstream 281641 2209921 ~ 2210496 (-)
G116730 NA other downstream 1129333 1361878 ~ 1362804 (-)
G116997 NA other upstream 219356 2712785 ~ 2713247 (-)
G117683 NA other upstream 398431 2891860 ~ 2892359 (-)
G117893 NA other upstream 550590 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1343993 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 1551855 4035189 ~ 4049592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021512 ppp1r3da coding NC_007134.7 CM002907.2 12160900 ~ 12162754 (+)