G116893


Basic Information

Item Value
gene id G116893
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2331314 ~ 2334316 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU132800
AATGAAGCAATTTTCTTTTTTTATTTGTGGCCAAAAAAACTCAACACTAAAAGAAGGTTTACTAAAACTATGAGGTTTTTTTTGGTGATTACAAACAGGGAAATCATCCCCTATGAATAACACACTGAATTGATTTAGGTAAAATAACTCAATTATGTATTGCTATGCAAAATCAATCTCACAACTCGTTCCGGTGGTTAAATCAGCACGGTTCACTGCATGCATGACCGCAGGTGGTTCGGCAGCATTTCTGTTCGGCAGGGCACTGACCATCATGGTAACAGTATTCGGCACACATTGGAGTCCCCTTCGGTAGGGCACAACGACCGGGCTTCACTGTATATGGAGCTGTACATTCATGTCCACATCCATTGCTGCAGCATTTCTCATTGTTGGGACAGTCACTGTCATTGGCACAGTACTCGGCACACACTCCTGCTCCAGATTTTCTGCGTGGACACACTCCTGGCTTTGTGAAAGCAGGTGGCACACACACAGCGCCACAGTCAAATACACAGCATCTGTGTCCTCCAGAGCAGTCTCTATCAGAAGCACATCCTCGACTGGAAGGCACGACCGTCAGCTTCCTCGGACAGTGACCGGCCACTGTGAAGTTTCGTCCTGGAGCAGCATCTGTTGTGCACAAGCATCCAGACAGACACAATAACACAGCACTAACCGAGCAGTACACTCGAGCTGTCATCTTCTCGACCTGCTATCACACAATGAACTCTGCTGGAAAAAGCGCTG

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 11-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU132800 True 750 TUCP 0.47 4 2331314 2334316

Neighbor

gene id symbol gene type direction distance location
CI01000021_02317457_02320931 HAUS8 coding downstream 9651 2317457 ~ 2321663 (-)
CI01000021_02309119_02315738 NA coding downstream 15576 2309024 ~ 2315738 (-)
CI01000021_02299075_02305974 MRGBP coding downstream 25340 2298424 ~ 2305974 (-)
CI01000021_02290326_02297117 EEF1A1, EEF1A2, EEF1A1A, EEF1A2.S coding downstream 34197 2289943 ~ 2297117 (-)
CI01000021_02191178_02193192 NA coding downstream 137966 2190044 ~ 2193348 (-)
CI01000021_02335864_02337990 NA coding upstream 1047 2335363 ~ 2341260 (-)
CI01000021_02386235_02398978 PIGT coding upstream 51270 2385586 ~ 2398978 (-)
CI01000021_02458161_02471710 NA coding upstream 123838 2458154 ~ 2471710 (-)
CI01000021_02492524_02493429 PPP1R3DA coding upstream 157821 2492137 ~ 2493429 (-)
CI01000021_02503590_02509554 TTLL9 coding upstream 168252 2502568 ~ 2509554 (-)
G116900 NA non-coding downstream 238 2330683 ~ 2331076 (-)
G116891 NA non-coding downstream 883 2330226 ~ 2330431 (-)
G116889 NA non-coding downstream 1440 2328063 ~ 2329874 (-)
G116872 NA non-coding downstream 80029 2250802 ~ 2251285 (-)
G116848 NA non-coding downstream 142822 2187864 ~ 2188492 (-)
G116957 NA non-coding upstream 200752 2535068 ~ 2535384 (-)
G116962 NA non-coding upstream 258435 2592751 ~ 2594183 (-)
G116959 NA non-coding upstream 274258 2608574 ~ 2616059 (-)
G117104 NA non-coding upstream 412762 2747078 ~ 2747812 (-)
G116856 NA other downstream 120818 2209921 ~ 2210496 (-)
G116730 NA other downstream 968510 1361878 ~ 1362804 (-)
G116997 NA other upstream 378469 2712785 ~ 2713247 (-)
G117683 NA other upstream 557544 2891860 ~ 2892359 (-)
G117893 NA other upstream 709703 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1503106 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 1710968 4035189 ~ 4049592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022190 wfdc2 coding NC_007134.7 CM002907.2 12418613 ~ 12423778 (-)