CI01000021_02290326_02297117 (EEF1A1, EEF1A2, EEF1A1A, EEF1A2.S)


Basic Information

Item Value
gene id CI01000021_02290326_02297117
gene name EEF1A1, EEF1A2, EEF1A1A, EEF1A2.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2289943 ~ 2297117 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02290326_02297117.mRNA
CTCGTTTCTGCTGCTGTTGCAGCTGTCTCACTGCAGTCCCTCACAACCAGCCTCCCCCCTTTTTGAGTGCCGCATTGCTGTATCAAAGAGCACAGAGTGTCTGTTTGCTGAGGAGAGAACAGGGTCCGTCTGTCAACTGCAGACAGAAGAAAGCTCCATCCGTTCCCATCCTTACTTCCTGCCCTGTGTCATCATGGGGAAAGAGAAGATCCATATCAACATTGTGGTCATTGGCCATGTTGATTCTGGGAAGTCCACCACCACTGGCCATCTCATCTATAAATGTGGAGGAATTGATAAAAGAACCATTGAGAAGTTTGAAAAAGAGGCTGCTGAGATGGGAAAAGGTTCCTTTAAGTACGCCTGGGTTCTGGACAAGCTGAAGGCTGAGAGGGAGAGGGGAATTACCATAGACATCTCACTCTGGAAGTTTGAGACCACCAAGTACTACATAACTATAATAGACGCTCCAGGACACAGAGACTTCATCAAGAACATGATCACTGGGACGTCTCAGGCTGATTGTGCTGTTCTAATTGTGGCAGCTGGAGTGGGTGAATTTGAGGCGGGCATCTCTAAAAATGGGCAAACGAGGGAACATGCCCTGCTGGCCTACACGCTGGGCGTCAAGCAGTTGATTGTAGCTGTTAACAAGATGGACTCCACTGAGCCGTCCTACAGTGAGAAACGCTATGATGAGATTGTTAAAGAAGTCAGTGCCTACATCAAAAAGATCGGTTATAGCCCAGCCGCCGTACCCTTCGTCCCAATTTCAGGTTGGCATGGTGACAACATGCTGGAATCATCTTCTAATATGCCGTGGTTTAAAGGCTGGAAGCTGGACAGGAAGGAGCAGCATGCCAGTGGCGTTACTCTACTGGAAGCTCTCGATACTATCATGCCTCCATCACGTCCCACTGACAAACCCTTACGTCTACCTCTACAAGACGTCTACAAGATTGGAGGTATAGGGACCGTCCCGGTGGGCAGGGTGGAGACGGGTATCCTGCGGCCAAGTATGGTGGTGACCTTTGCCCCAGTCAACATCACTACAGAGGTGAAGTCGGTGGAAATGCATCACGAGTCTCTGACCGAAGCTCTGCCGGGAGACAATGTGGGCTTTAACGTGAAGAACGTGTCTGTAAAAGACATACGGAGAGGTAACGTGTGTGGGGACAGTAAGTCAGACCCGCCCCAGGAAGCATCAGGGTTTACAGCACAGGTCATCATTTTGAATCACCCAGGTCAGATCAGTGCAGGTTACTCTCCTGTCATAGACTGTCACACCGCTCACATTGCCTGTAAGTTTGCTGAGCTTAAGGAGAAGATTGATCGCCGTTCAGGCAAGAAGCTGGAAGACAACCCCAAAAGCCTGAAGTCTGGAGATGCCGCCATTGTAGACATGATCCCAGGAAAACCAATGTGTGTGGAGAGCTTCTCTCAGTATCCTCCACTGGGACGTTTTGCTGTCAGAGATATGAGACAGACTGTTGCAGTCGGTGTCATAAAAAGCGTGGAGAAGAAGATCGGCGGCAGTGGAAAAGTGACTAAATCGGCCCAGAAAGCTCAAAAATCTGGCAAATGAATCTGAATCTCCAAATTACGTTGTCACCTCAGGCCTCGCCCCAGCTTACATGCCCCCCTCATCTGGGCATGCTCAGTCTTTTCCCCCTGTGTGCTTGAAATATATGCTTGAACCAACATTTGATCGACTGAAGGAAATAATGAAAGACTGACATGATCACATTTTGACTGGTTGCACTGTATATTCACTTTTAATAACAGACCCGTACACAAGTTGCATGGATGTCTGTCTGGATATATGCACGGCATCTGTTAAATGAATGTAGCTGGTATTGCCGAGTAATGTGTGAGCGTGTGTTTGTGTGCGTGTGTGGTGTAAAGAAATCAGTGGAAAACTACACTTTGACCAGTATAACAATGATTATGATGTCCAAAGGAAATAAA

Function

symbol description
eef1a1a Predicted to enable GTPase activity and translation elongation factor activity. Acts upstream of or within heart development. Is expressed in asteriscus; brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).
eef1a2 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in central nervous system; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 38; developmental and epileptic encephalopathy 33; and ovarian cancer. Orthologous to human EEF1A2 (eukaryotic translation elongation factor 1 alpha 2).
eef1a1 Enables protein kinase binding activity and tRNA binding activity. Involved in cellular response to epidermal growth factor stimulus and regulation of D-erythro-sphingosine kinase activity. Located in several cellular components, including cortical actin cytoskeleton; nucleolus; and ruffle membrane.

GO:

id name namespace
GO:1904714 regulation of chaperone-mediated autophagy biological_process

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02290326_02297117.mRNA True 1968 mRNA 0.48 9 2289943 2297117

Neighbor

gene id symbol gene type direction distance location
CI01000021_02191178_02193192 NA coding downstream 96595 2190044 ~ 2193348 (-)
CI01000021_02104468_02137901 NA coding downstream 150034 2104098 ~ 2139909 (-)
CI01000021_02045322_02085906 NA coding downstream 203706 2044938 ~ 2086237 (-)
CI01000021_02005120_02042997 SULF2B, SULF2 coding downstream 246776 2004826 ~ 2043167 (-)
CI01000021_01922936_01956597 NA coding downstream 333346 1922719 ~ 1956597 (-)
CI01000021_02299075_02305974 MRGBP coding upstream 1307 2298424 ~ 2305974 (-)
CI01000021_02309119_02315738 NA coding upstream 11907 2309024 ~ 2315738 (-)
CI01000021_02317457_02320931 HAUS8 coding upstream 20340 2317457 ~ 2321663 (-)
CI01000021_02335864_02337990 NA coding upstream 38246 2335363 ~ 2341260 (-)
CI01000021_02386235_02398978 PIGT coding upstream 88469 2385586 ~ 2398978 (-)
G116872 NA non-coding downstream 38658 2250802 ~ 2251285 (-)
G116848 NA non-coding downstream 101451 2187864 ~ 2188492 (-)
G116847 NA non-coding downstream 102125 2187578 ~ 2187818 (-)
G116805 NA non-coding downstream 478604 1810846 ~ 1811339 (-)
G116834 NA non-coding downstream 502261 1787299 ~ 1787682 (-)
G116889 NA non-coding upstream 30946 2328063 ~ 2329874 (-)
G116891 NA non-coding upstream 33109 2330226 ~ 2330431 (-)
G116900 NA non-coding upstream 33566 2330683 ~ 2331076 (-)
G116957 NA non-coding upstream 237951 2535068 ~ 2535384 (-)
G116856 NA other downstream 79447 2209921 ~ 2210496 (-)
G116730 NA other downstream 927139 1361878 ~ 1362804 (-)
G116893 NA other upstream 34197 2331314 ~ 2334316 (-)
G116997 NA other upstream 415668 2712785 ~ 2713247 (-)
G117683 NA other upstream 594743 2891860 ~ 2892359 (-)
G117893 NA other upstream 746902 3044019 ~ 3044787 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 1540305 3901897 ~ 3932508 (-)

Expression


Co-expression Network