CI01000021_03267771_03288743 (EIF4BA, EIF4B)


Basic Information

Item Value
gene id CI01000021_03267771_03288743
gene name EIF4BA, EIF4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3267302 ~ 3288743 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03267771_03288743.mRNA
ATGCAACAAGCCACGCCCCCATCCGGGGATATGACACGCACTCCTTCTCCAGCATGGCGGCTTCAGACAACACGGAAGCGCTGTTTACATTGCTTACGGCACATTTTTCTCTTCGTTTCTCAGGCAGAAAATGAAGCACATGCAGCCAAGCCCGTGTCTATATGCTCGCTGCTTTGTGTTGTTTTCGTTACATTGCAACTATTTCGTTTTCCGAATGTATCACGGGACAGTATAATCATAATTCATAGAGTTGTCAGAGACTCTTTCTTCCTTCTACTTTCACAGCACATACTATTTGTTTGTTTCTTGACAGCTAAAAAGAATAAGAAAAAGGGTAAGACCCTTACCCTGACCGACTTTTTAGCGGAGGACAGCGGGGGAAATGCTCCACCGAGTTACGCGCCCACAAAGCCCACAAGCTGGGCCGACGAGACCGATGACCTGGAGGGAGATGAAGATGACGTGTACCGAGCGCCACCCATCGATCGGTCTATTCTGCCGACGGCTCCACGTGCTGCCCGTGAGCCCAACATCGACCGCTCCCGTCTGCCCCGCAGCCCCCCCTACACCGCCTTCCTGGGCAACCTCCCCTATGACGTCACCGAAGACTCCATTAAAAACTTCTTCCGTGGACTCAGTATCAGTGCAGTTCGCCTCCCGAGGGAGCCCAGTAACCCAGAACGGCTGAAAGGCTTTGGTTATGCAGAGTTTGATGACGTGGATTCTCTGCTGCGCGCACTCAGTCTCAATGAAGAGAACCTTGGGAATCGTAGGATCCGTGTAGACATCGCTGACCAGTCCAATGAGAAAGAAAGAGACGATCGCTCCATGTCCGGGCGGGACCGTAACCGCAGTGAGCGAGACATGGGCCCAGACAAGACTGATTCTGACTGGCGGGCACGGCCTAAATCTGACTCCGACGATGGACCACGAAGGGACGAGGGTTTTGGAGAGCGATCCAGAGATCGATATGATTCAGACCGTGGCCAGCGGTGGGACAATGATCGTTACGATCGTGATGGCGGGAGAGACAGATACCGGGAACGTTATGACGACAAAGAGCGCAGAGACTACGACAGAGGTTTTGATTCACGCAGTGGCGGACGTCGACCATTTGGAAGCGGTTTTCGGCGTGACTATGACGACCGGAGGGACGATTTTCGGGGCAGCGGGGAGCGCTATGGAGACCGCTATGGTGACCGTGAAGAGAGATACGAGAGACGGGATGAGAAGCGCGAGGACAGAGGTCCCCCTCAGAGACCCAAGCTAAACCTGAAGCCTCGCAGTGTTCCCAAAGAGGAAGACCAGAGCAGCAGCTCTTCATCCTCTTCTGGACGAGCTGCGTCCATCTTCGGAGGAGCCAAACCAGTGGACACGGCCGCTAAAGAGAGGGAGGTGGAGGAGAGGCTTAAGAAAGAGCAAGAGAGACTGCAGAGACAGCTGGAGGAGGACAAGAACAGAGGACCTGAACGCAAGCCCAGAGAAAGGCATCCCAGCTGGCGTAGTGAGGACCAAACAACTGAGCGCTCACGAACAGGAAGTGAGTCATCGCAAACAGGAAACACATCAAGCCGGGCGCCGAGGCGTCGAGAGAGTGAGCGCTCTGTAGAAAACGAGGTTTTCAGCAGCCGTGACGAGGAGTCATCCTCGCATGGAAGCCAGACTACTACTCCCAAGCAGGAGGGGCTGCCACTGAAAGTTGTTCCAGCACCGCCACCTAAAGAGAACGCCTGGGCGAAGAGGAGCACCATGAAAACAAAACAGATGGGGTGCGCCGGGATCGAGGCCCCTCTCGGGGTCGCGGTGGGGCCTTGGGCTCTGGAGCAGGCAGGGGGCGTGGAGACGCAGCCAGCCGAGACCGAAGGAAGGAGACAGACAGAAAGGATGCAAGAAGAGAGCGAGATCTCAGACCAGCACCAGAGCCAAAGAAATTTGAGGAGCCTCCAAGCCCTGTGAGTGACAGAGCTAACACTCTCTCTGGGTGTGATCCCATGATCCCCACTCCCTGTGCTTTTACTTCTGGCTTTCATTGTTCAACAATCCTTTAATGAATATTTTCTCTAGTGCCTTTTTTAGAAGCTCCAGTCTCTGTAATGGAAATTACAATGTTGGTTTCAGACTGTAATTGTGAGCTTCTTTTGGAAGATATGTGACTTGACAAATGTAAATATTTATTTGAGTCTAGACACATAATTCTGATGCACGCATTGAATTACAGTCGTAGAATTGAGAATACTGATGCAAACCTTAATACATGCTTGTATGTGAAAACATTACATTTGACACCCTATTCCAAGCTATTTGTGCTCTGGCACATGAACCAGCCTGACCTCCAGCCTCCTCCATCTCATACAGATGTATATCAGTCTTAAAGATGCAAATGTTTTTCCATGCTTAATAAGGCTGCATGATATATAGAAATAAA

Function

symbol description
eif4ba Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B).
eif4b Enables RNA binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Located in cytosol. Biomarker of autism spectrum disorder and major depressive disorder.

GO:

id name namespace
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process

KEGG:

id description
K03258 EIF4B; translation initiation factor 4B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03267771_03288743.mRNA True 2425 mRNA 0.52 15 3267302 3288743

Neighbor

gene id symbol gene type direction distance location
CI01000021_03246184_03250332 NA coding downstream 16970 3246011 ~ 3250332 (-)
CI01000021_03184886_03225117 TNS2, TNS2A coding downstream 39939 3184566 ~ 3231042 (-)
CI01000021_03088285_03098959 NA coding downstream 168343 3088025 ~ 3098959 (-)
CI01000021_02791299_02829637 CHL1A coding downstream 437423 2790485 ~ 2829879 (-)
CI01000021_02620174_02687913 CNTN3A.1 coding downstream 579389 2619568 ~ 2687913 (-)
CI01000021_03319954_03323293 NA coding upstream 30367 3319110 ~ 3323340 (-)
CI01000021_03324720_03328120 KRT18 coding upstream 35612 3324355 ~ 3329454 (-)
CI01000021_03438153_03448377 NA coding upstream 148017 3436760 ~ 3448377 (-)
CI01000021_03572797_03577241 SLC16A7 coding upstream 284026 3572769 ~ 3577582 (-)
CI01000021_03748559_03755297 ADRM1.S, ADRM1 coding upstream 459610 3748353 ~ 3755297 (-)
G117789 NA non-coding downstream 131474 3128169 ~ 3135828 (-)
G117749 NA non-coding downstream 148794 3109921 ~ 3118508 (-)
G117777 NA non-coding downstream 157443 3109342 ~ 3109859 (-)
G117915 NA non-coding downstream 186805 3080216 ~ 3080497 (-)
G117957 NA non-coding upstream 48526 3337269 ~ 3337605 (-)
G117966 NA non-coding upstream 60972 3349715 ~ 3350490 (-)
G117974 NA non-coding upstream 75305 3364048 ~ 3364254 (-)
G117984 NA non-coding upstream 85881 3374624 ~ 3374944 (-)
G117985 NA non-coding upstream 86290 3375033 ~ 3375354 (-)
G117893 NA other downstream 222515 3044019 ~ 3044787 (-)
G117683 NA other downstream 374967 2891860 ~ 2892359 (-)
G116997 NA other downstream 554055 2712785 ~ 2713247 (-)
G116893 NA other downstream 932986 2331314 ~ 2334316 (-)
G116856 NA other downstream 1056806 2209921 ~ 2210496 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 548679 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 756541 4035189 ~ 4049592 (-)
G118639 NA other upstream 1461354 4750097 ~ 4767372 (-)
G118801 NA other upstream 1865148 5153891 ~ 5154291 (-)
G119215 NA other upstream 2236112 5524855 ~ 5530926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location