G117789


Basic Information

Item Value
gene id G117789
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3128169 ~ 3135828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU133858
AAATTAATACTTAAATAAAACTTCTAAGTCCGTCTGACATGTTTTATTTTTTGTTTTTTAAATGAGCATTTTTTTTATACCAGGCTCCTATGTTTAGGTTCAGTAATTTCACGTAAATGTCGATTAAAAGGTTATTAGTCAGATATTGAAATGCCTTATTTTCAAAAATATCACTTTAGTCAATTCACTGGTATTTATCAATTTTTTTTTTCCACATCTTTGGACAACAAGACACAGTAAAATGTCCATTTCTGTCAGTTTTACAGCAGCAAAAGGAACACTGTTGTGTTTACTTGCTAGTCGCGAAATCGTGTCATTTCCACTGTAACGATGGACAAAACATGATAAAAACTTGCAGCTCCGCAATTGAAATACGCTCATACACACCGTCATTCATCTTGAAATCATATGATTCGATTTGTGTCTTCCGATTGGTTCTTCTGTGGACTTAAAAGGCTTTTGGTGACAAAGGGAAGTGCCGTTTAGCGGTTTCTACCAACGAACCGGTATTTCTGAATGGGCTGACACTGGGATTTAACGGATTTGATCGCTCAATATCATTATCTCATTTTTGACGGAGGTGGCGTTTAGCGGCTTTCGCATCTGAATTATTCAGCAAAGACGCATTAAATTGATCAAAAGTGATAGTGAAATCATGAAGCTCTACATCACATGATTAAATTACATGAATAATTATTGCAAGATTTCACTGTTTTACTCAAGATATTGCTGTTTTACTGTATTTTTGACCTAATGAATGCAGCCTTGGTGAGAGTAAGCATAAAAGACTTCTTTCAAAAACATAAAAAAGGATGCACCGAATGTTCACAAACCTAAATAATTTGGCCAAAAATACCAAAAAAAAAAAAAGAAAAAAAAGAAAAACTTTTGACGTTCGTCCAAATAAGTAAAAAGACAGAATAAATGTTACCGAACAATGATGTTTTTGATGACGTGATCAAATAGCAACCAGTGTAGAGTGAGAGGCGCGCAGGCTTTATAAATACAGCAAATATGTCCGCAGTGTGGAAGAATTTTAATGCGTCCAAGAAAGATGCAAAAATGGCTGTTTACAGACAATGTTCTGCTGAATTGTCCATTTCATTTCCTGTGAGACATCATTGTTTTGGAATGAGCAACTGTCAAAAGACGGCAATATAAATAGAAAAGAATATACAAAAAAATACAAAACCATGTTCGGTATTCCATGTTCGGCCAAGTGTTTCATTATATTTGGTTTCAGCCAAGAATTTTCATTTTGGTGCATCCCTAAAAAAAATAAAAAATAAAATATATCTTACTGACCCCAAACTTTTGAATGGTACTACTGTAAATAAAATATTAAAAACTAAACTCAATTGTTATTAATGCTACAAGTAGGGCTGGGCTATATGGCAAAAAAATAAAATCTCAATTTTTCGATTTCAATTTTTTTTTTTTTATGTTTAACTAGTCAACTTAAAAACATAACTACAACACGATTCAAATAACATTCTCTTTATTAACCATCTGGTTAAAAATAAGTTCTATTTCTTACACCGTGTCTATCACATCGCGCCGTGCCGCAACAGCTAAAAGAGGGAATTTGTTGCCGCATCCAGTGTAGACAATATCACTGATTATAATGGGTTCTATTGTCTTTTAACGCGTCGCGCCGCACCACGCCACTCACGTCCGGTGTAGACACGGTGTTAGCCAAAAAGTAATAGCAATAAACACCACCAGTAATAGGCTATTATTAAAGGATTAGTTGACTTTCAAATGAAAATTATTAGGGGGGTCTGGCGGAAGCTAGATATTTTACTTCATATTCCTTGTTAAATATGGATTTTTTTTTTTTTTTTTTTTTACAGTCTATGGTATGAATGTGCAACGGGAGTCAAGCCTGTATTCTCTCACCAGTAACCATAGCGACAGTGAACAAAATAACAAAGACAGTGACGTCCATAAAACTGAAAATCTTAGCACTTTTAACACGAGTCAAGCTGCAAGTTCATCCGACAAATCTGTTCATTAACTGACAGCAAGCTTTTAGATCAGAGCGGAGAGTCGCACGTCAAACACAAAACTGTTGGGAGCAGTGAGAACAGTGACTGGATCTAAAACCCTCATATCTCCATCGGTGTTAGTTATTGTAAGCACACATGAAAACCCGCAACACATGGTAGATAGACACACGTTTGTGCAGAGCAGAGCGGCTCTCTTGCACTTTATGATGTGACAGACCACAAGTTGTCTAGTCCGGTTTTCATTCCCGTAAATAACTGAACTGTCTGTGAAGGATTTGACATGTTAAAAGCTTGAGGGTTTGAATGTTTGACAAATATTTGTATTGTAACTTGTAGAGTTAGTTGGTTCCTGTAAGGAGTGAATATGAGACATTTTCATATGAAACTGTTCAGATCACAATATATGATAAAATATTTACAATATCACTTTTGGCCAATAATAAAAAGAAAAGTTACTAACAACTGATTAAATATTTTGTTTACCTGCATGCCATGTGACCAATAACTGAAATCAGAGAACTGTGAACATGTGTCATTAAATTGTTTAAATATTAACTTAAAATCTAAGGGTGTACTTCAAGTTAATATTTTATGCTGAGGGGTTTAGCTAACCAAAAAAAAAAAAAAGTTTGGAAACCCCTGCACTAACAAATGAAATCCTCTTGAATGCTCTACTGAAAGTGTTTTGCAGTTGTGCTGAATGGACAGATCTTCACAATGGACCGTAAAGTGAGGGAACCCGATCCTAAGGGCAGGTAACACCTGGTTTAAGAACAGACAACTCAAGTAAAGAGACAGAATGGTACGCCTGTATAAGTGCTCCAACAAATGATTAACTGAATTGTAAATGCTCAGAGGAAAAAGGAGAAACGAAACCCGTCAAGGGGCGTTGCTTTTTTTTGTTTGTTGTAGTTTCAACAACTTCAAATTCAAACAGTGAAACTGAAGGAGAAATTTTTAACTCCTTAGTAGTACACTCATAAAGAATAACGAAACTGAACACACGAAGCAAACAAAAGAAGTACTGGCTGTGAAAACCTAGTGCTCTTTCAACTTTTGGGCATTATAGGTGCCTAAAAATACTGTCTAGGTAGGTGCTTCACTAGGTTGTGAGACAAAACAAAAGTAACGCCTCTATGAGAGGATGCATGTGAATCCCTGTTTAAACCTGCTGACCAAAATCAAACCACCCAGTTAGGATTAACACTCAGTTGAATGAGGTTTGACTAATGCCAACTGACAAACATTGTAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU133858 True 3262 lncRNA 0.35 2 3128169 3135828

Neighbor

gene id symbol gene type direction distance location
CI01000021_03088285_03098959 NA coding downstream 29210 3088025 ~ 3098959 (-)
CI01000021_02791299_02829637 CHL1A coding downstream 298290 2790485 ~ 2829879 (-)
CI01000021_02620174_02687913 CNTN3A.1 coding downstream 440256 2619568 ~ 2687913 (-)
CI01000021_02522404_02530893 NA coding downstream 597276 2522053 ~ 2530893 (-)
CI01000021_02503590_02509554 TTLL9 coding downstream 618615 2502568 ~ 2509554 (-)
CI01000021_03184886_03225117 TNS2, TNS2A coding upstream 48738 3184566 ~ 3231042 (-)
CI01000021_03246184_03250332 NA coding upstream 110183 3246011 ~ 3250332 (-)
CI01000021_03267771_03288743 EIF4BA, EIF4B coding upstream 131474 3267302 ~ 3288743 (-)
CI01000021_03319954_03323293 NA coding upstream 183282 3319110 ~ 3323340 (-)
CI01000021_03324720_03328120 KRT18 coding upstream 188527 3324355 ~ 3329454 (-)
G117749 NA non-coding downstream 9661 3109921 ~ 3118508 (-)
G117777 NA non-coding downstream 18310 3109342 ~ 3109859 (-)
G117915 NA non-coding downstream 47672 3080216 ~ 3080497 (-)
G117912 NA non-coding downstream 51770 3076173 ~ 3076399 (-)
G117910 NA non-coding downstream 54904 3073054 ~ 3073265 (-)
G117957 NA non-coding upstream 201441 3337269 ~ 3337605 (-)
G117966 NA non-coding upstream 213887 3349715 ~ 3350490 (-)
G117974 NA non-coding upstream 228220 3364048 ~ 3364254 (-)
G117984 NA non-coding upstream 238796 3374624 ~ 3374944 (-)
G117893 NA other downstream 83382 3044019 ~ 3044787 (-)
G117683 NA other downstream 235834 2891860 ~ 2892359 (-)
G116997 NA other downstream 414922 2712785 ~ 2713247 (-)
G116893 NA other downstream 793853 2331314 ~ 2334316 (-)
G116856 NA other downstream 917673 2209921 ~ 2210496 (-)
CI01000021_03902018_03931315 ACSS2 other upstream 701594 3901897 ~ 3932508 (-)
CI01000021_04035411_04049515 CCM2L other upstream 909456 4035189 ~ 4049592 (-)
G118639 NA other upstream 1614269 4750097 ~ 4767372 (-)
G118801 NA other upstream 2018063 5153891 ~ 5154291 (-)
G119215 NA other upstream 2389027 5524855 ~ 5530926 (-)

Expression


Co-expression Network