CI01000021_03324720_03328120 (KRT18)


Basic Information

Item Value
gene id CI01000021_03324720_03328120
gene name KRT18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3324355 ~ 3329454 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03324720_03328120.mRNA
TGAGCAGTTTAATTCTTGTGTATTTCCAACGTTAGCAATTTTAGCAACCTACAAGCCCAAAGTAAATCCTCTGGGAATGTGTGGATAGTATCAGCTTTCTTTTCTGAAACTCATCTTTGTCAAACTTATTTCAAACAGATATGGGTCTAATCCAGTGTGTGAATGGGTTTAAAACTATTGGGGGGTCTAGATAGGTTTCAGTGATTAGCTCATTTCTTTGTCCGTACATGTGTGTGTAGCCAGACTAATTGTTCCTTTGTTCACACATCCTTTTACAGGCGTGGCAGTCAGGAAAATCCTTTTAGGTGATCGGATATCACAACTAGAAAAATTGTGATAGGCTAATCCTTTTTTCTCTTAACCATTTTTGGCAGTTTTTTTCCAGTGTAATGGTTATCAGAGAAAGATGAGAAAGATAAGAAAGACGGCCTGCCGAAACACGAAAATCTTTTTTTTCATTTACAGTATGAGCCACACACAAAAAAGAGTCGACAAATTGCAAAACATAATGATTTCTCAATATGAGTGTTTAACAAGTTTGGTTTCCCTGGAAGAGAGTTACTCAATAGTTCCTGCATATTTTCATACTACGTTAGTATATTTGTAATACAAAGATAACAATATCAGTTGTGTGAATAAGTGGTAACCCTTTACAATCATTGTTAACATTAGCAGGTATCACAAACTATCTTTAAACAAATTTAGTCACACTTTAGATTAGGGTCCAATTCTCAATATAAACTACGACTTTTGCCTCAATAAACTTGTAGAATATGATCAGAATAAGGCATTAATATGTGCTTTATAAATACTAATAAACAGCCAATATCCTATTAATATGCATGCTAATAAGCAACTAGTTAATACTGAGAAATGGAAACTAAAGTGTTATCACAAATCTTTACACCATTTATCAATCTAGGTGAATGTCAATTCAGAAATAATATTTTTCATTGTTTCACATTTTTAAAGTAAATCTTTATCAGAGATTTCATATCAAGAATGTATTATATTTTGTAAATAATAGAAGTGCATGTTCTTTTGATTAAAAAAACCCTCAAAAATCCTGATGTGAAGAACATTTCACTCTAATTTCAGAGAGGAAAAATGGAGCCACTTGTAATAACAAACTTCTTAAAGGCATCCAGTCACAGAACCGCAGACTCGAATGTTTCTGCTGTAGGAGGAGCTTGGGGCGGGACTCCTGAAAGCTGTTTGTTCATAAAGCCAGAGAGTGTCCCTCATGCCCTGTGCACTCCTCTGGCTGTGTGTTACTGAGCTCTATCTCTCTCCAGGCCTTCATTCACTCATCTGCTCACTCACTTACAGCAACCATGAGTATGAGAACAAGCTATAGCGTGCGTTCCTCCACCTCCCAGGTGCCGATGTCCCAGATGTCCATCAAGCGTTCCACCAACGTGCCAACTTACCGGGCTGCGAGCATCTACGGCGGCGCCGGAGGTCAAGGAACCCGTATCTCCTCTGCTTCCTACCAAGGTGTCCGCAGTGGAATGGGACTTCCCTCAATGTCCAGCTCCATCCATGTGAGTGCAACCGGAGCCACAGGTGAGATCATGGGCAATGAGAAGATGGCCATGCAGAACTTGAATGACCGTCTGGCCTCCTACCTGGAGAAAGTGAGGTTCCTGGAGCAGGCCAACAGCAAGCTGGAGTTGAAGATCCGTGAGGCCCTGGAGAAGAGAGGTCCTGATGTCCACGACTACAGCCGTTTCCAGCCCATCGTTGATGAGCTGCGCAAGAAGACGTGGAAAGCATTTACGACAAAATACATCAGGTTAGAAAAAACAGGAAATCCAACTTTTCCGCTAGACAACTTAATTTACAACTGTCAGACACCAGATGCTTTTCCAACATGGCTGTTGGTTAATGATTATCCAACGAACTGTGAAGTGGACTTTGTTCTCCAGTATCTCTTATCTAAGCAAATTAAGGCATCAGGGCAGAAGATGATCTTTGATGCCACCACAAATAATGCCCGTCTGGTGCTCCAGATTGATAATGCCCGTCTGGCAGCTGATGACTTCAGAGTCAAGTATGAATCTGAGCTGTCCATCCGCCAAGGTGTGGAGGCCGACATTGCCGGCTTGAGAAAGGTCATTGATGACACCAACCTGAACCGCATGAACCTTGAAAGCGAGATTGAAGCCCTCAAGGAAGAGCTCATCTTCCTCAAGAAGAACCATGACAATGAGGTAATGGAGCTTCGTAACCAGGTCTCCCTGTCAGGAGTGCAGGTGGATGTTGATGCTCCTAAGGGTCAGGATATTGCCCAGATCATGGAGGAGATGAGAGCCAAGTACGAGAAGATGGCTCTGAAGAACCAGGAGGAGTTGAAGGCCTGGCACGAATCTCAGATCACAGAGATTCAGGTACAAGTCACACAGAACACAGAAGCCCTCCAGGGTGCTCGTACAGAAGTCAACGAACTTCGCAGACAAATTCAGACATTGGAGATCGAGTTGGAGTCACAGAGGAACCTGAAAGGATCCCTGGAGGCCACCCTGAGGGATACAGAAATGCGTTACAACATGGAGATCGAGAGTCTCAACACCATCGTCATGCAACTGGAGTCTGAGCTCACAAAACTGCGCAACAACATCCAACACCAGACACAGGAGTACGAGGCTCTGCTGAACATCAAGATGAAGCTGGAGGCAGAAATTGCCACCTACAGGAGGCTTCTCGACGGTGGAGACTTCAAGCTCCAGGATGCTCTTGACGAGCAAAAGAAGGTTAAAGTGATGACGGTCACGCAGACGCTGGTGGATGGGAAGGTGGTGTCTTCAAGCACAGAGACCAAAGAGAGGAATCTTTGAACATCAAATTTCAGATCAACCTCCACAACACATCAGAAAAACCTTATGGGCCAATGATAAAATGATCTAAAGACAGGTTGGACTTAACACATTAGATATTTATTTAGTCCGAAGTGCCTTATTGTAAGGGTCTCAGAGCACATATGCAATGAGATTTAACTAGAACATTCCAATACTAATTTAAAACAACAAATGTAACACTTTAATGACTATTAATAGCCAAAAAAGACTGAAAGTCAAAGAACACTATTGAAACTTTATTACATATTTTTGTAATGATAATGATTGTTTATGCCGAATCATTGATTGTCCCATTTCGTTTCTATGCTGTGTTGTTGTCATCATGTCTTGTCTTTTCCAATAAA

Function

symbol description
krt18 Enables scaffold protein binding activity. Involved in Golgi to plasma membrane CFTR protein transport; intermediate filament cytoskeleton organization; and negative regulation of apoptotic process. Located in centriolar satellite; cytosol; and keratin filament. Implicated in liver cirrhosis. Biomarker of liver disease (multiple); non-alcoholic fatty liver disease (multiple); and primary sclerosing cholangitis.

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG:

id description
K07604 KRT1; type I keratin, acidic

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03324720_03328120.mRNA True 3202 mRNA 0.42 8 3324355 3329454

Neighbor

gene id symbol gene type direction distance location
CI01000021_03319954_03323293 NA coding downstream 1015 3319110 ~ 3323340 (-)
CI01000021_03267771_03288743 EIF4BA, EIF4B coding downstream 35612 3267302 ~ 3288743 (-)
CI01000021_03246184_03250332 NA coding downstream 74023 3246011 ~ 3250332 (-)
CI01000021_03184886_03225117 TNS2, TNS2A coding downstream 96992 3184566 ~ 3231042 (-)
CI01000021_03088285_03098959 NA coding downstream 225396 3088025 ~ 3098959 (-)
CI01000021_03438153_03448377 NA coding upstream 107306 3436760 ~ 3448377 (-)
CI01000021_03572797_03577241 SLC16A7 coding upstream 243315 3572769 ~ 3577582 (-)
CI01000021_03748559_03755297 ADRM1.S, ADRM1 coding upstream 418899 3748353 ~ 3755297 (-)
CI01000021_03760052_03774483 OSBPL2, OSBPL2B coding upstream 430262 3759716 ~ 3774483 (-)
CI01000021_03902018_03931315 ACSS2 coding upstream 572443 3901897 ~ 3932508 (-)
G117789 NA non-coding downstream 188527 3128169 ~ 3135828 (-)
G117749 NA non-coding downstream 205847 3109921 ~ 3118508 (-)
G117777 NA non-coding downstream 214496 3109342 ~ 3109859 (-)
G117915 NA non-coding downstream 243858 3080216 ~ 3080497 (-)
G117957 NA non-coding upstream 7815 3337269 ~ 3337605 (-)
G117966 NA non-coding upstream 20261 3349715 ~ 3350490 (-)
G117974 NA non-coding upstream 34594 3364048 ~ 3364254 (-)
G117984 NA non-coding upstream 45170 3374624 ~ 3374944 (-)
G117985 NA non-coding upstream 45579 3375033 ~ 3375354 (-)
G117893 NA other downstream 279568 3044019 ~ 3044787 (-)
G117683 NA other downstream 432020 2891860 ~ 2892359 (-)
G116997 NA other downstream 611108 2712785 ~ 2713247 (-)
G116893 NA other downstream 990039 2331314 ~ 2334316 (-)
G116856 NA other downstream 1113859 2209921 ~ 2210496 (-)
CI01000021_04035411_04049515 CCM2L other upstream 715830 4035189 ~ 4049592 (-)
G118639 NA other upstream 1420643 4750097 ~ 4767372 (-)
G118801 NA other upstream 1824437 5153891 ~ 5154291 (-)
G119215 NA other upstream 2195401 5524855 ~ 5530926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location