RNA id: CI01000021_02522404_02530893.mRNA


Basic Information

Item Value
RNA id CI01000021_02522404_02530893.mRNA
length 846
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000021_02522404_02530893
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2522053 ~ 2530893 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTATTTTGCAGTTTTGAGGCAGACCAGAAACCATATGCTTGGTTTTCAAAAACGGCCAAACTTCATGTCTTCCAGCTCTGAAGGTGCATCATTGCCCCGGACAGGAGACCTGCACTCATCTCCAGTCTTCTGTGATGATCCGAACAGTGTTTTACATCAGCAGACAGAAGCAGAGCTCATTTCAGCATCACACACCCACACAAGATCCAAGCGCTGCACTTGCTACTCTTTTAAGGACAGGGAATGTGTTTATTACTGTCACTTGGGCATCATCTGGATCAACACCCCACAGCGCACAGTTCCGTATGGCATCTCAAGTTACCGCAGCCCTCAGCGATTGAGGCGCTCCAGTGGGACAGAAGGGCTGCTGCTTCATCGCTGCACATGTGCAGACCGCAATGATGCCCAGTGCTACAACTTTTGTGATACAAGATGTGGAGCAAAAACCTACCCCGCATTCCTCGCCATGTTATATTTCCTGGAACGCCCTTGACTCATCTGGTCCACGGTAACAAGTGAATTCTTTAGAAAACTCTTTGCAGATTTCGGAATCATGTCTGTGTGGCACCAACATCTTTGCTTCAAGGGTTATATCCACTTGTTTCAGTGTGACTTTACACTGACTTTACATCTAATGCAAATATTCAGTGGACATCCTTGAATTTGGGAGCCTTGCAGTATTGGAAGCAAATCTGTAAAACACACTCTGGATAATATCCACTTTGTGGGCAGATTTTCAGAGAGCACACAGATGGATTAATGGGTGAAGATGGAGATGAAGCGTGTTTTGAATTTTTTACGTGTACTGAGGCTCCTTCACTTTGCCCGATAGCGGAAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132804 lncRNA downstream 185584 2335467 ~ 2336469 (-) True CI01000021_02335864_02337990
TU132808 lncRNA downstream 190977 2330683 ~ 2331076 (-) True G116900
TU132796 lncRNA downstream 191622 2330226 ~ 2330431 (-) True G116891
TU132794 lncRNA downstream 192179 2328063 ~ 2329874 (-) True G116889
TU132774 lncRNA downstream 270768 2250802 ~ 2251285 (-) True G116872
TU132879 lncRNA upstream 4175 2535068 ~ 2535384 (-) True G116957
TU132889 lncRNA upstream 61858 2592751 ~ 2594183 (-) True G116962
TU132884 lncRNA upstream 77681 2608574 ~ 2616059 (-) True G116959
TU133050 lncRNA upstream 216185 2747078 ~ 2747812 (-) True G117104
TU133095 lncRNA upstream 336310 2867203 ~ 2867432 (-) True G117136
CI01000021_02503590_02509554.mRNA mRNA downstream 12499 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 28624 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_02458161_02471710.mRNA mRNA downstream 50343 2458154 ~ 2471710 (-) True CI01000021_02458161_02471710
CI01000021_02386235_02398978.mRNA mRNA downstream 123075 2385586 ~ 2398978 (-) True CI01000021_02386235_02398978
CI01000021_02335864_02337990.mRNA mRNA downstream 180793 2335363 ~ 2341260 (-) False CI01000021_02335864_02337990
CI01000021_02620174_02687913.mRNA mRNA upstream 88675 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02791299_02829637.mRNA mRNA upstream 259592 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_03088285_03098959.mRNA mRNA upstream 557132 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 653673 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 715118 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
TU132800 other downstream 187737 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 311557 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 1159249 1361878 ~ 1362804 (-) True G116730
TU132929 other upstream 181892 2712785 ~ 2713247 (-) True G116997
TU133731 other upstream 360967 2891860 ~ 2892335 (-) False G117683
TU133963 other upstream 513126 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 1306529 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 1396897 3927790 ~ 3931056 (-) False G117733

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042742 True 1267 mRNA 0.42 4 NC_007134.7 12072980 ~ 12106839 (+)