RNA id: TU132804


Basic Information

Item Value
RNA id TU132804
length 1003
lncRNA type sense_over
GC content 0.42
exon number 1
gene id CI01000021_02335864_02337990
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2335363 ~ 2341260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGTTTATGCCTAGGAGCATAGAGAATATAGTTTTAGTTTATATAGTTTAGAGACTCTTGCTTCTCAAGTATTTTGAAAGATCCAGGTTCTTTTGTAATTCTTGACTAAATATAAATCATAAAATGTCATTTTTGTTGTACGAATGTTACACATCCTGTGTGCCACTCCCTATATCTGACTGATGTGCCATAAATATGTTACTGCAGATCCTCTGTGGTCAGAGCCCTTGTGCCAAGCATGGTTGCAATGAACACCAACTTCACACAAGACCAACCATTGTTTAGCAGTTTGTAAGTATAAACTGGCCTTGGTGTTTTGGTTCTTTATAACTTTTTCACCTCTGACTTCCAGTATCCCAGTCAAAGAAGAGTCAAGCTACTTTGTGCAAGTGTACACAGAACCCCTGCTGGTAAATCTACCCACACCTGACTTCAGCATGCCCTACAACGTCATCTGTCTCACCTGCATGGTGGTCGCGGTGGGCTACGGCTCCTTTTACAACTTGCTGACCCACACGTTCCAGGTGGATGAACCGAGTCCACCGCTGGCCAAACGCTTGGCTAACCTCGTTCGTCGCATAAGGGGAGTGCCACTGCTGATCTAACTGCCGAGAGCAGGTCTGACGCCTGAAATGTCCATATTAGGCAGCTGAGAGAATCATGACTTTAATACAGCATCTGCTGGAGTTTTAAGATGATTTTCAGCCCTGGAAGGACTCAATGCCAAGTGACTGTTCTGAACTTTTGTTGAACAAATAAGCTTCCAAGACAGATGGATTAGCCGCCCTTTTATGTTTTTTTGTTTTGTTTTGTTTTGTGAATCACCTCTTTGAGAGCGTGACCAAGTGTCACAGAAACACAGACACCACAATCCAACTACTGGAAATGGATGTCTAAAAATGTGGCAAGTATTTTCTACTTTCCGTAATGCACTGATATTCAAATATGTGTTGTTTTGAAGGACTGGACTGTTTTTAGTGTTTTGGCTTTTTTTTTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132808 lncRNA downstream 4391 2330683 ~ 2331076 (-) True G116900
TU132796 lncRNA downstream 5036 2330226 ~ 2330431 (-) True G116891
TU132794 lncRNA downstream 5593 2328063 ~ 2329874 (-) True G116889
TU132774 lncRNA downstream 84182 2250802 ~ 2251285 (-) True G116872
TU132750 lncRNA downstream 146975 2187864 ~ 2188492 (-) True G116848
TU132879 lncRNA upstream 198599 2535068 ~ 2535384 (-) True G116957
TU132889 lncRNA upstream 256282 2592751 ~ 2594183 (-) True G116962
TU132884 lncRNA upstream 272105 2608574 ~ 2616059 (-) True G116959
TU133050 lncRNA upstream 410609 2747078 ~ 2747812 (-) True G117104
TU133095 lncRNA upstream 530734 2867203 ~ 2867432 (-) True G117136
CI01000021_02317457_02320931.mRNA mRNA downstream 13804 2317457 ~ 2321663 (-) True CI01000021_02317457_02320931
CI01000021_02309119_02315738.mRNA mRNA downstream 19729 2309024 ~ 2315738 (-) True CI01000021_02309119_02315738
CI01000021_02299075_02305974.mRNA mRNA downstream 29493 2298424 ~ 2305974 (-) True CI01000021_02299075_02305974
CI01000021_02290326_02297117.mRNA mRNA downstream 38350 2289943 ~ 2297117 (-) True CI01000021_02290326_02297117
CI01000021_02191178_02193192.mRNA mRNA downstream 142119 2190044 ~ 2193348 (-) True CI01000021_02191178_02193192
CI01000021_02386235_02398978.mRNA mRNA upstream 49117 2385586 ~ 2398978 (-) True CI01000021_02386235_02398978
CI01000021_02458161_02471710.mRNA mRNA upstream 121685 2458154 ~ 2471710 (-) True CI01000021_02458161_02471710
CI01000021_02492524_02493429.mRNA mRNA upstream 155668 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_02503590_02509554.mRNA mRNA upstream 166099 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02522404_02530893.mRNA mRNA upstream 185584 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
TU132800 other downstream 1151 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 124971 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 972663 1361878 ~ 1362804 (-) True G116730
TU132929 other upstream 376316 2712785 ~ 2713247 (-) True G116997
TU133731 other upstream 555391 2891860 ~ 2892335 (-) False G117683
TU133963 other upstream 707550 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 1500953 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 1591321 3927790 ~ 3931056 (-) False G117733

Expression Profile