RNA id: TU133050


Basic Information

Item Value
RNA id TU133050
length 735
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G117104
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2747078 ~ 2747812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGAGACTCCGCCGTAAGACATCTAGCCTTTATTATGTATATCTATGGTGTAAACTGCAAAAACACGAATCTGTGAAAACGGTGACGTCACGCACATGCGTAGTACGTGTTTAGTCTATCCACCTTATTTGTCAACGCGGAATTAAGGTATTTCTGTGAATGTGTAAGACTTCAGATTTATTAGCCGCTATAGGGAAATAATGAGAAGAATATGAAAGTTCTGTAAACTGTAAAAAATAAGGTGGATAGTCATGCACGTTTGGTGCGAGTGTTAAGAATGCGTATGCACAGGCGCGTAATCCTTCTTTACGATCGGTGCGTTCCAAACGGGATATTCGGTTGTTAAGTCTGACGTCACGCTGCAGCGCTTCCGGGTCCAAACGCTCTATCTCATACCACAAGAAAACAACAAATGGTGCTAATATACACACACGATGTGGTGTAATACTTCCAAAAAATTATAATCATAACCTTTATCTCCATACCAAAATCCCAGATGGCCAGACAGTGATTCATCTTTTATATATTGTTAAAATATTAATGTCTGTGACGCTGTGAGCACGGAGACTGTTGTGTAGACTGTAAGTATTTTAAATGTTTAACTTTAAAATGTTAAATGTTTAATATGAATAAATAGCGCTCATAAACAGTCGTGGAGATGCCATTCTCAAGTGAAATGAGTCGAGGCTTGGACCCAGAAACGGCGTTCCTTACGTCACGACTTAACAAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132884 lncRNA downstream 131019 2608574 ~ 2616059 (-) True G116959
TU132889 lncRNA downstream 152895 2592751 ~ 2594183 (-) True G116962
TU132879 lncRNA downstream 211694 2535068 ~ 2535384 (-) True G116957
TU132804 lncRNA downstream 410609 2335467 ~ 2336469 (-) True CI01000021_02335864_02337990
TU132808 lncRNA downstream 416002 2330683 ~ 2331076 (-) True G116900
TU133095 lncRNA upstream 119391 2867203 ~ 2867432 (-) True G117136
TU133098 lncRNA upstream 122133 2869945 ~ 2870273 (-) True G117139
TU133728 lncRNA upstream 144276 2892088 ~ 2892359 (-) False G117683
TU133729 lncRNA upstream 144276 2892088 ~ 2892335 (-) True G117683
TU133950 lncRNA upstream 264826 3012638 ~ 3013091 (-) True G117881
CI01000021_02620174_02687913.mRNA mRNA downstream 59165 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 216185 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_02503590_02509554.mRNA mRNA downstream 237524 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 253649 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_02458161_02471710.mRNA mRNA downstream 275368 2458154 ~ 2471710 (-) True CI01000021_02458161_02471710
CI01000021_02791299_02829637.mRNA mRNA upstream 42673 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_03088285_03098959.mRNA mRNA upstream 340213 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 436754 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 498199 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
CI01000021_03267771_03288743.mRNA mRNA upstream 519490 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
TU132929 other downstream 33831 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 412762 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 536582 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 1384274 1361878 ~ 1362804 (-) True G116730
TU133731 other upstream 144048 2891860 ~ 2892335 (-) False G117683
TU133963 other upstream 296207 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 1089610 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 1179978 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 1179978 3927790 ~ 3931056 (-) True G117733

Expression Profile