RNA id: TCONS_00042742


Basic Information

Item Value
RNA id TCONS_00042742
length 1267
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_021509
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12072980 ~ 12106839 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAGTCTTTTCCAACAGGGTTGTTTTCAGATTTTGATGAGGATGCTCAGAactattttttttgactgaaatggatttgttttggaaaacatttttcatttagaAACCCGGAAACCGCATCTGACAACTTTTTTCCCCCCACAAATTGGTCTCGAGCACAATAATAAGGACGCTATTAAAATGGCTAAACTGATTCCTGATGCACTTTTGCTAATTGTGAGTTTGATAAACATTTTCACCGTGGATACATCGTTTTCCAGTGAGGGAGACTTGCACTCATCTCCAGTCTTCTCTGGTGGTTCCAGCAGTGTTGGACATCAGCAGAAAGAAGCGAAGCTTGTTTCAGCATCACACGCTCACACAAGATCCAAGCGCTGCACTTGCTACTCTTTCAAAGACAGAGAATGTGTTTATTACTGTCATTTGGGCATCATCTGGATCAACACCCCACAACGTACAGTTCCATACGGCATGTCAAGTTATCGCAGCCCTCAGAGATTAAGGCGCTCCAGCGGGACTATATCAGTGGTTCTTCGTCGCTGCTTATGCACAGACCATAATGATGTCCATTGCTACAACTTCTGTGATGCAAGCTCCGAGAATGTGTCAGAGGGAAGATTGAGAGGACGTTCACCTTGGTAAGACCACTGGCTTCTTGTCACACCTCCAGCCTCAGAAATCAGGACTGATGATCAGCATCAAACCGGGCATCTAACTAGGTACAGGTTTTGGATTTTTACAGATTTGGAGTAAAAGCTACCCCACATTCCTCAGCGTGTTATATTTCCTGGAACGTCCTTGACTCATCTGGTCCACGGTAACAAGTGAATTCCTTAGAAAACTCTTTGCAGATTTCGGAAGCATATCTGTGTGGGACGCACGTCCTTGCTTCAAGGGTTACGTCCAGTTGACTTTACATTGACATTTTAACAAATGCGAATACTCAGTGGACGTCCTTGGATTCGGGAGCCTTGCAGGTCTGGAATCAGATCTTTAAAATACTCTATGCATTATCTCCACTTTGTGGGCAGATTTTCAGACGGATAAAGTGAGTCTTGAATTCTTCACTTTGCCTGATTGCAGAAAATAATATGTTCAATGTTGTTATTGTGAATGaactgagaaaaaaaagtttCCTGAGAGAAAGATTGCCAGATTAACcgctacaatttttttttaacctccTAAACATATCCTTTCTGATTTTGCTCACTCAAGCAAAATGTTTTTCCTCTGCACAACaagttttgacattttattttctcc

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0003100 regulation of systemic arterial blood pressure by endothelin biological_process
GO:0014826 vein smooth muscle contraction biological_process
GO:0070285 pigment cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0060585 positive regulation of prostaglandin-endoperoxide synthase activity biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function
GO:0031708 endothelin B receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-235 Predicted to enable endothelin B receptor binding activity and hormone activity. Acts upstream of or within melanocyte differentiation and pigment cell development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in epidermis. Human ortholog(s) of this gene implicated in Hirschsprung's disease; Waardenburg syndrome type 4B; Waardenburg's syndrome; and congenital central hypoventilation syndrome. Orthologous to human EDN3 (endothelin 3).

Ensembl:

ensembl_id ENSDART00000141646

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042740 lncRNA upstream 221086 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00042736 lncRNA upstream 698296 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00044786 lncRNA upstream 848375 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042733 lncRNA upstream 1258483 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00042721 lncRNA upstream 1916452 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044787 lncRNA downstream 100592 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00044788 lncRNA downstream 152697 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044789 lncRNA downstream 566564 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00044790 lncRNA downstream 567211 12674050 ~ 12830266 (+) True XLOC_021518
TCONS_00044791 lncRNA downstream 568088 12674927 ~ 12675421 (+) True XLOC_021519
TCONS_00042738 mRNA upstream 211587 11669109 ~ 11861393 (+) False XLOC_021507
TCONS_00042739 mRNA upstream 213631 11669337 ~ 11859349 (+) False XLOC_021507
TCONS_00042734 mRNA upstream 620668 11285662 ~ 11452312 (+) False XLOC_021506
TCONS_00042735 mRNA upstream 624233 11347313 ~ 11448747 (+) False XLOC_021506
TCONS_00042737 mRNA upstream 624240 11374168 ~ 11448740 (+) True XLOC_021506
TCONS_00042744 mRNA downstream 28000 12134839 ~ 12150475 (+) False XLOC_021511
TCONS_00042746 mRNA downstream 28007 12134846 ~ 12138175 (+) True XLOC_021511
TCONS_00042747 mRNA downstream 54061 12160900 ~ 12162754 (+) True XLOC_021512
TCONS_00042748 mRNA downstream 91403 12198242 ~ 12228363 (+) False XLOC_021513
TCONS_00042750 mRNA downstream 255060 12361899 ~ 12412034 (+) False XLOC_021515
TCONS_00042741 other upstream 137280 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042731 other upstream 1466434 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042724 other upstream 1721407 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 1722551 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 1914079 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042745 other downstream 28000 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 107128 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042766 other downstream 1335769 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042770 other downstream 1497379 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042779 other downstream 2361164 14468003 ~ 14470571 (+) True XLOC_021539

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_02522404_02530893.mRNA True 846 mRNA 0.46 4 CI01000021 2522053 ~ 2530893 (-)