RNA id: TCONS_00042724


Basic Information

Item Value
RNA id TCONS_00042724
length 596
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_021499
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10347851 ~ 10351754 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTACTCATCGTAGACATTCGGAATTGAAAATTCAATCCTTAACTCTTGGGTTATGATTGTTGCGATTTTCAGAAAGGGTCACTGGAGGGAACTCTGCGGGACACAGAAATGCGATACAACATGGAGATCGAGAATCTCAACACTATCATTCTGCAGCTGGAGGCTGAGCTCACACAACTGCGCGGTAACATCCAGCATCAGACGCAGGAGTACGAGGCTCTGCTGAACATAAAGATGAAGCTGGAGGCAGAAATCGCCACCTACAGGAGGCTACTGGATGGTGGAGACTTCAAACTCCAGGATGCTCTTGAAGAGCAGAAGAAGGTCAAAGTGATGACGGTCACGCAGACGCTGGTGGATGGAAAGGTTGTGTCCTCAAGCACAGAAACCAAGGAGAGGAAACTTTAAACATCCAATTTCAGATGATGAGCCGCAACACATCAGAAAAACCTCATGGGCTATTGATAAAACGATCTTACAACTTAACACATTAGATACTGTGTCTATTTATTCCAAAGTGCCTTATTGTAAGCATCTCAAAGCACATGTTGTGTGCAATGAGATTTAGCCAGTACATttcaacattaattaaaaa

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030411-6 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including EVL; cardiovascular system; gall bladder; head; and pronephric duct. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

Ensembl:

ensembl_id ENSDART00000137866

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042721 lncRNA upstream 194363 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044783 lncRNA upstream 398065 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA upstream 398065 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA upstream 398065 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00044658 lncRNA upstream 484953 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00042733 lncRNA downstream 462457 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00044786 lncRNA downstream 872551 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042736 lncRNA downstream 995863 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00042740 lncRNA downstream 1497175 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 1855858 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00042719 mRNA upstream 185858 10146542 ~ 10165033 (+) False XLOC_021498
TCONS_00042718 mRNA upstream 461561 9867483 ~ 9889330 (+) True XLOC_021496
TCONS_00042714 mRNA upstream 783697 9561016 ~ 9567194 (+) False XLOC_021492
TCONS_00042713 mRNA upstream 783772 9561010 ~ 9567119 (+) False XLOC_021492
TCONS_00042725 mRNA downstream 1348 10352921 ~ 10355552 (+) True XLOC_021500
TCONS_00042726 mRNA downstream 45269 10396842 ~ 10453077 (+) False XLOC_021501
TCONS_00042727 mRNA downstream 45316 10396889 ~ 10449449 (+) False XLOC_021501
TCONS_00042728 mRNA downstream 74646 10426219 ~ 10449005 (+) False XLOC_021501
TCONS_00042729 mRNA downstream 80203 10431776 ~ 10448688 (+) True XLOC_021501
TCONS_00042723 other upstream 462 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 191990 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 623459 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042716 other upstream 732556 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042706 other upstream 1042330 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042731 other downstream 249751 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042741 other downstream 1584011 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 1731984 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 1783266 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 1862394 12213967 ~ 12218375 (+) True XLOC_021513

Expression Profile

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