RNA id: TCONS_00042726


Basic Information

Item Value
RNA id TCONS_00042726
length 6370
RNA type mRNA
GC content 0.42
exon number 15
gene id XLOC_021501
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10396842 ~ 10453077 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTACCCAAAATTCTAAATGCGCAGTGGTGTCTACGCGTCGACGTATCGCTGCAAGACACGCCCCCATCCGGGCATATGACACGCACTCCTTCTCCAGCATGGCGGCTTCAGctaaaaagaataagaaaaaggGTAAGACCCTTACCCTGACTGACTTTTTAGCAGAGGACAGTGGTGGAAATGCTCCACCCAGTTATGCGCCCCCGAAGCCCACGAGCTGGGCCGACGAGACCGATGACCTGGAGGGAGATGTTACTACATCCTGGCACACAGAAGATGAGGTGTATCGCGCACCACCTATCGATCGCTCAATTCTGCCGACTGCTCCACGTGCTGCACGCGAGCCCAACGTGGACCGCTCTCGTCTGCCCCGCAGCCCTCCTTACACCGCCTTCCTGGGCAACCTTCCCTACGACGTCACCGAAGACTCCATCAAAAACTTCTTCCGCGGACTCAGTATCAGTGCTGTTCGCCTCCCGAGGGAGCCAAGTAACCCAGAGCGGCTTAAAGGCTTCGGCTATGCAGAGTTTGATGATGTGGAGTCTCTTTTACAAGCGCTCAGCCTCAATGAAGAGAACCTTGGAAATCGTAGAATCCGTGTAGACATCGCTGACCAGTCCAACGAAAAAGAGAGAGACGATCGCTCTGTGTCTGGCAGGGATCGTAACCGCAGTGACCGAGACATGGGCCCAGATAAAACCGATTCAGACTGGAGGGCAAGACCTAAATCTGAAGCCGACGATGGACCACGCAGAGATGATGCATTTGCAGAGCGTTCCAAAGACCGATATGATTCTGACCGTCACCGTGAAGGTCAGCGGTGGGACAATGATCGTTATGATGGAGGAAGAGACAGATACCGGGAACGATATGATGACAGAGAGCGCAGAGACTATGACAGAGGCTTTGATTCACGCAGTGGGGGACGGCGACCCTTTGGAAGCGGCTTTCGGCGTGACTATGACGATCGGCGGGATGATTTTCGGGGCAGTGGAGACAGATATGGTGACCGTGAAGAGAGATTCGAAAGGCGGGATGAGAGGCGTGACGACAGAGGCCCTCCTCAGAGGCCCAAGCTGAACCTGAAGCCTCGGAGTGTTCCTAAAGATGAAGAGCCATCCCGGGGGCCTTCAGCCTCCTCTGGACGGGCTGCGTCCATCTTTGGTGGAGCCAAACCGGTGGACACTGCTGCTAAAGAGAGGGAGGTGGAGGAGAGGCTTAAGAAAGAGCAGGATAGACTGCAGAGACAGCTGGAAGAGGACAAGAACAGAGGACCTGAACGCAAACCCAGAGAGAGACATCCCAGCTGGCGTAGCGAGGACCAAGGAACCGAACGCTCGCGGACAGGAAGCGAGTCATCACAAACGGGAAACCCACCAAGCAGGGGGCAGAGGCGTCGGGAAAGTGAACGTTCTGTAGAAAACGAGGTATTCAGCAGCCGTGATGAGGAGCTATCCTCTCATGGAAGTCAATCTCCTGCCTCAAAACAGGAAGCTTTGCCGCTGAAAGTTGTTCCAGCGCCACCACCGAAAGAGAACGCTTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCACTGAGAGCGATAGTAAACCCGCCGTTTCTCCCAGCAGCGCCGCTCCACCTAGAAGCTTGCCAGGCTCAGGGGATGTTCCTCAAAGAAATAAAGATGAAAACAAAGCAGATGGGGTGCGGCGGGATCGGGGCCCCTCTCGGGGTCGCGGTGGGGCCTCGGGCTCTGGAGCAGGCAGGGGGCGTGGAGACGCAGCCAGCCGAGACCGAAGGAAGGAGACAGACAGAAAGGACGCAAGAAGAGAGCGAGATCTCAGACCAGCACCAGAGCCAAAGAAATTTGAGGAGTCTCCCAGTCCTAAATTCAGCTCAGCCAGTAAATACGCAGCCTTGCTGATGGACGGAGAGCAGGCAGGAGAGGAAGATGGTGGAAATTAAGACGGACTGCAATTTTAATTACCAATTAAACCTACAGCTTTTGTTTCATGCAGCACCGAAGGACCCAGATGAGCCCtttgagagcaaaaaaaaaaaaaacattttagagcaAACCCCTTCCTCTTCAGGACTGAACCGAAAACCTTGTGTGAAAATCCAGGACTTGTTTTAAAGTAAAGAGAGTGGAGGAATGAATGCTTTTGACTAATTAAAATGCAAAGGAAAAGGATCCTGCATACATCATACATTGAGAGTGCATTTTCTCCTTAGCTTGATCGCACGTTGAGCGACCGGAAGATGTAAAATCAGGGGGAAAGTGCCACGAGATGAATGTTTTCCCTGATCTTTAGGGCTTCCTGAGCTTTCTTAAAGGACGTTTACAGTAGATGCTTTTCCGAGATCTTCGGTCAAGTAAAGCGGTCTGTGATCTGCATTGGTTATAAATCTCACAACCTTGGTTTAATGTCTTTAAACTCAAACCCGGTCCCTTGATTTGCATTCAGGGGCTTTCAGATCAGGTCAGAACCTGTTAGTTTCGGTTTGATATTTCTCCGCGTGGCTTTAAGCAGGAGTCTCCCGTTTTTATCTCATTTATCCTTTGAGGACTTTTTAAAGCCACTCCTTTGGACTGATGTGCAATAGGAATTGAAGTATTCCTCTGAATCTCCATGTTTCAACAACAGAGACTGCTGCAGCTTTGGGTTGAACATATATCTAAAGGTAGTGACATGAATTGCTTATTGATATAAACTGTGTACCATCTgaaaaaacaaaccaataaaagaCCATGAGTCATGTATGGTTTGGAGGACATTGTCAATCACGATGCATTGCAGAGTTTGAGTATTATTAGTCGATATGCGATGAAATGCAGCAGAAAGTGCTTTCTAATGTCATTATTTTTAGAGTTGTTATGCATTAGCATCTAaaattgactttttgttttctacAATATTGCAAAGAAAGCttttgatgaaaataataatacaaaatacggatcatttcatttttgttgttagtttttttttcttttttttattgacaataCATAGTATTTGCCAAAATCAGACATTTTAAAggggcggcgcagtgggtagcacgttcgcctcacagcaaggtcgctggttcgatcctcggctcagttggtgtttctgtgtggaatttgcatgttctcccggcgttcgcgtgggtttcctccgggtactccggtttctcccacagtccaaagacatgcggtacaggtgaattgggtaagctaaattgtccgtaaggtatgagtgtgtgtgtgtatgtgtggatctttcccagagatgggttgaggctggaagggcatccgctgcataaaaacttgctggataagttggcggttcattccgctgtggtgacaccagattaataaagggactaagtcgacaagaaaatgaatgaatgagacattttaaaattacatttatatttctttCGGGTTTCTTGCTAAATTGTACATTTATGAATGTCAGTTATGAGTGTTTTTaagatgtttcaagagttcactcttagctgatgattgataaagtgtgtttggcatgctgtcctgggagtgagccctgagctcagaacatcttcgagcccggggctccctcccatttgaagagcgagaggggagtttgagcttaggtcttgagaactcccctgcttgtaaACGTGTTAGGAATAGCTAAGATATAGCTGGCTAAGAGTTGTcttacactcttagaaataaaggagagctgtcactggggtggtacctgtTTAAacggtacaaatttgtacctaaaaggtccatagtaacacctcaagggtacatattagtaccttaaaagtacaaaagtgttcctcttcaaATTTTTTGGTTCTTATATATACTTTTAATgtaccaaaatgtaccttttcaGTAAAAACGTGTGCCTTTTGAAAacgtaccaccccagtgacagctcttgtaccttttttctgagagtcTAGGATGCtactttggattagtcaatttaatTATGATATATGTCTTTGGATGTTGTGAGGAAACTGggaaacccggggaaaacccacacgagcatggggagaacatgcaaactccgcatagAAACGCAGACTGGCCTGGTGAGGGGTCAGATCTGtggcgttcttgctgtaaggcaacagtgctaaccactgtgctgctGTGCCGCCCTATCAGGAGTagtggaggagtaggggtggaagggggattcaaGACGAAGGTGACTGAAGTGGAGAAAACTGTTATTCATATTGAGTCAGTAATTATCTGATTGGTGCAATATGCAAAGCGGATaggggaccagctgtgatcaatcataaggccatgatcctctcaaaattagtttattgataaaccacacttaaagtccccatgaaatcaaaactaaccatatgattttgttagctcacattgctagttttgtggtaaacaattcatctgtgcatgtctttaagaaataaaaaatgtttgcccTTCTATTCTTTTATTGAGgtctgaaaatgcactttctgatttttgttttcagttaaattgtcagattacataTATCTTAAGAATTGGAATCCAACTGTCCGCTTTATCAATCAATCCAAcggtcagttttgacaacaaacagaaatggtgagggggagagaagtctgttaggttgtaacaactttccccaaacccttttccccatctttctaaATGAACATCTACATCCTTTGAACATGAACTTTATTACATCCactcagctcgcagtagaaaaatacaagccacacccactgttttctcatttataaTCCCTTTTGTCTAGGAACTGTCAAAATACAGTCGCAGCTTtcagttcatgtggactttaaataaGTCTTAAACTCATCAAGGTTTCATTTGATTAAAAcaatttttgtattcatttttgtttaaaatttttgttttataaagtaatttttgCAATAAAAAGGTTGAAAGTAATGTTTGTGGAACCATTGCTtccatacagttaaagtcagaattattagccccccactgaattattagcccccctgtttatttttttcccaaatctctgtttaatggagagaagatttttctcaacacatttctaaacctaatagttttaataactcatttctaataactgatttagctttgtcatgatgacagtaaataatatttcactagatatttttcaggacacttataaacagcttaaagtgacatttaaaggcttaactaggttaattaggtcaactagggtaaataggcaagttattgtataacgatggtttgttctgtggacttttgaaaaaaatatagcttaaaggggtttaTAATTTTgatcctaaaatgttttttaaaaatgtaaaactgcttttattttagccataataaaacaaataagactttcttcaggaaaaaaaactattatcagacatttggtgaaaatttccttgctctgttaaacatattttaaaatatttaaaaaagaaaaaaaagtcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttgaagtcagaattattagcccccttaatttttttcttctttttaaaatattttctaaatgatgtttaacagagcaaggacattttcacagtatttctgataatatttatttctactggagaaaatcttacttgttttatttcggctagaataaaaggcattttttattttttaaacaccattttagggacaaaattataagcccctttaagctttattttttctcgataatctacagaacaaaccactgttatacaataacttgcctaattacccttacctgtctacttaacctaattaatccagttaagcctttaaatgtcattttaagctgtatagtggtgtcttgaaaaaatatctagtcaaatattatttactgtcatcgtggtaaagataaaataaatccattattattaatgagttattaaaaatattatgtttagacttgttgaaaaaaatcttctcttcattaaacagatattggggaaaaataaataagaggtctaataattcaggggggctaataattccgacttcaactgtatgtatatatatatattagtacaaAAACACCTTTTTGCCAGCTGTTTCTATGGGCTGCTAAGCTTAAACTTATGCCATCTTGGAACAGTTTTACCCAATCCATGAAATTATGGAGAGCAAGCTGTCTGTGTCTGCAAACGTAGCTATACACATGTGAAAATCTGTATGACCTGTAGACGTTAGCATATGATTTTGCTGAGCTAACACATTGAAAACATCTGCAGTTTTGACAACCAAGTGCGACTTGTTTTTGTGCCATCTCTGAAAACTCTTTGAATAAAATCATTCTGGAGCTTCTAAA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0034057 RNA strand-exchange activity molecular_function
GO:0033592 RNA strand annealing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060629-1 Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B).

Ensembl:

ensembl_id ENSDART00000167593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042721 lncRNA upstream 240314 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044783 lncRNA upstream 444016 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA upstream 444016 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA upstream 444016 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00044658 lncRNA upstream 530904 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00042733 lncRNA downstream 360953 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00044786 lncRNA downstream 771047 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042736 lncRNA downstream 894359 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00042740 lncRNA downstream 1395671 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 1754354 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00042725 mRNA upstream 41290 10352921 ~ 10355552 (+) True XLOC_021500
TCONS_00042722 mRNA upstream 45088 10347851 ~ 10351754 (+) False XLOC_021499
TCONS_00042719 mRNA upstream 231809 10146542 ~ 10165033 (+) False XLOC_021498
TCONS_00042718 mRNA upstream 507512 9867483 ~ 9889330 (+) True XLOC_021496
TCONS_00042714 mRNA upstream 829648 9561016 ~ 9567194 (+) False XLOC_021492
TCONS_00042730 mRNA downstream 16878 10469955 ~ 10587257 (+) True XLOC_021502
TCONS_00042732 mRNA downstream 352111 10805188 ~ 10827419 (+) False XLOC_021504
TCONS_00042734 mRNA downstream 832585 11285662 ~ 11452312 (+) False XLOC_021506
TCONS_00042735 mRNA downstream 894236 11347313 ~ 11448747 (+) False XLOC_021506
TCONS_00042737 mRNA downstream 921091 11374168 ~ 11448740 (+) True XLOC_021506
TCONS_00042724 other upstream 45269 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 46413 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 237941 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 669410 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042716 other upstream 778507 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042731 other downstream 148247 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042741 other downstream 1482507 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 1630480 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 1681762 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 1760890 12213967 ~ 12218375 (+) True XLOC_021513

Expression Profile

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