RNA id: TCONS_00042735


Basic Information

Item Value
RNA id TCONS_00042735
length 4565
RNA type mRNA
GC content 0.46
exon number 26
gene id XLOC_021506
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 11285662 ~ 11452312 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCTGGTATTACTGGTTCTGGCTTTTCACGAGTTGACAGAGGTCTGTCACACAgctcgtgtttgtgtttgtgagtgCAGTTGTGTTTGTTTGACAGAAGGACAGTATAGTGTGAGTGAGGAAGAAGATACTTTAAGatctTTCTCTTGAAGGAGTCAGTAAGAAGCTCCTGACGAAAAGTACGAGTGTTTTGAGCATATCCTTCATCTTTCTCTGGCTGGGATGAGGGGGCTCAGGAGTCTCAGTGTTGGGCTCCTGTCGGCCTTCTTCTCCACCACCTTTGGTCTTTATTTCCCTCCTCACGTGGAGCAGCTGCCCACCATCACCGCTCAGACCTCAGGCACTATCATCGCCCTACCATATGATGAGCGATACATATTCAAGTGTGAAGCCAAAGGAAACCCAAGACCTACGTTCCGCTGGACAAAAGATGGGATGGATTTTGACCCACATAAAGACCCTCAGGTCACTACAGAAGAAAATACTGGAACCTTTGAGATaccaaataaaaaagataaagtgAAATACCAGGGAAAGTACAGATGTTACGCCTCCAACAAACTCGGAACTGCAACTTCAGAAGAAGCCGAATTTATTGTGCCTATGGTACCCAAGTTTCCCAAGGAGAAGATAGAGCCAATTGTGGTCACAGAGGGTGATTCGGTGGTTTTGGAGTGTAACCCGCCACAAGGGATTCCACCCTGGCAGCTGTACTGGATGACCAATGATCTCCGGCACATTGAGCAGAATGAGAGGGTGTCCATGGGCCTCAGTGGGAATCTGTACTTCTCTAATACGCTGGTGTCAGACAGTCATGATGACTACTGCTGCTTCGCCTCCTTCTTCAAAATACGCACAATCGTCCAGAAACCCCGCATGGTCCTCAAGGTCAAGCCAGttgatGCAAAGCAAGAGGATGGTGATGCCAAGATTGTTCAGGAGAGGAAGCCAAGCATCTTGGTTCCCTCCAGTCATTCAACGACTTTCCTGAAAAAAGGAGAAGAGCTGGAGCTGGAGTGTATTGCAGAAGGACTGCCTACACCGGAGGTAGAATGGATCAAGATATGGGGTGACTTACCAAAGCGCACGCAGATAAAGAACTTCGGAAAGCTTCTGACAATACCAAACATCAGAGAAGAGGACGAAGGAAAATACATGTGTAAAGCCAAGAATCAGCATGGTGAAGATGTGCATCATTTCCAGGTCGAAGTAGAGGAGCCACCGAGCTGGCAGAAGGAGCCGCTGAAGAGTCAGTTAGCATGGATTGGATCTGACATCCACATCAACTGTTCTGCTACCGGAAAACCGCAACCCACAATCACCTGGAAAAGAAACGGCAAGCCCCTCGATGATTTCCCTTCCACCCATCACAAAATGCTTGACGACAGAATAATCATACTCAAAGCGGAGCAGAAAGATACCGCTGTGTACCAGTGTGAGGCCTCCAACAAACACGGCAGCCTACTGGCCAATGCTAATGTGCTAGTCATGAATCACCCTCCTTTGATTCTGACGAGGAATTATCTGGAGTATGCAACCATGTTGGGCAAGAGTGTGATTATGGACTGCAATGTCTTTAGTTCACCACCTGCCACCCTTAACTGGAGAAGAGAAGACCCAGAGGGCTCTGTAGATGGAGAGAGATATTCTCTGCTGAAGAATGGCTCCCTGCAGATTCACAAAGTCGAGATGGAAGATATGGGCCAGTACAAATGCTTGGCAAACAACTCCGAGGGCACTGCAAGCATCACCACTGAACTTTTCATTAAAGATTCCACTAGGATCGTGGAGGCTCCTCAAGACATGAAGGTCATCCGGGGATCTGTGGCCGAGCTGGAGTGCCAGGTGGAGTGCGACCCGTCTCTGAGAAGAGAGCTGGAGTTCGTTTGGCTCAAAGATGGGATAAATATCCTCTCGAACTCCTCAGAAAGGTATTTTACAGATGAAGGAATTCTTCAGATATTCAACGTGAGTCACAGTGATCAAGGGAATTACACCTGTATTGTTCGAACATCACTGGACCAAGATACAGCTTCTGCATACATAACAGTCTTAGATGTCCCCGATCCTCCGGTTGAATTATTGCTCAGTGATCTGAAAGACCGCAGTGTGAAGCTCCATTGGGTGAACACCAGTGATCACAACAGTCCCATAACAGAGTTCATCATCCAGTACGAAGAGAGCCACTGGGAGCCAGAGAAGTGGAAAGATCTTCTTCGAGTGTCTAGCAGGAAGTTCTCAGCCCCCTTGGCTCTGTACTGCCACATTAACTACCAGTTCAGAGTCATTGCTGTCAATGAAATAGGGAGAAGTCATCCCAGTATGCCCTCAGGAAGATATAAAACACCTCCATGTGCTCCTGACAGGAACCCAGAAAACATTAAGATTGAGGGTCACCTGCCACATCAGATGGACATCAGCTGGGAGCCGCTCTTGCCGGTGGAGCACAACGGTCCCGGTCTGGAATACAAACTGAGCTACAGGCTCCTGGGTGTCGAGGACAGTTGGAAAGAGCAGATGGTAAAGAGACACTCTTTTGTGGTGCGAGACACCCCGACATTCGTCCCCTATGAAGTCAAAATCCAGGCCTTCAACCGCCACGGCTGGGCACCAGGACCCAAAGTGGTGACTGGTTATTCTGGGGAAGACTTGCCCTTGGTGGCTCCCGATAACGTATCTGCGGAGGTGTTGAACTCTACACTGCTGAAGGTCAGCTGGTCACCAGTGCCCCAAACCACCCTGAGGGGCCATCTTGGAGGATACACAGTGAACTACTGGCAAACTCAGAGTCTGTTGACCTCTAAGAAAATTCCCTCAGAGAGACAGTCTCTCACCATCCCTGGAAACAGGAGTCACACCATGGTGCCAGGACTGAAACCATTCTCTGAATATAGTCTGACTGTCAACGTCTTTAACCGGAGAGGGAATGGGCCCAGCAGCAGTCCCATCTCTTTCACAACTCCACAGGGAGTTCCTGAACAACCTCATTACCTGAAAGCCACAAACTTTCAGAAAGACGCCATCACACTGGTGTGGGCGCCTCCGCACGAAACCAACGGCCATCTCACAGGATACCTTCTGCAATACCAAACAGttgtAGATAATGAGACTCTGGGTGAGCTGAACTCTGTGAACATCTCTGGAGCAGACACGACACAGTGGGTTTTGCGTGATCTGCAGGAAGACAACTCATATAAGTTCTACCTGAGTGCGTGCACGCAGGTGGGCTGTGGGTCAGCCATCAGTGAGAAAGGAGGCACCGACCCTGCAGCATCTTCTAGCAGACAAGAGATGGGATCTCAGGAGTGGTTTGTGGGGATGATGTGCGCGGTGGCTTTGCTAACTCTGCTTGTCCTCATCGGCTGTTTTGTGCTCAAGAACAAAGGTGGCAAATACGCAGTAAAGGAAAAGGAGAACATTCCAGCTGATCCTGAATCTCATGGCATGGATGAAGAAACACCCTGTGAATACAGTGACAATGATGAGAAGCCGCTGAAGAGCAGCCAGCAATTGTTCCGAGACGCCACAGAGGATGATCGCAGTGAGGATAGCTCTGAGATATCAGAGGATGATGACTGCGAGTTCAATGAAGATGGGTCATTCATTGGTGAATACTCTGGGTACATGCGCAGGACGTCCACGGAGGTCAACGGATTGAATGGACATACCCCAGGAACTTCTTAACAGTGGCCCAATTTTATGAACTTTTTAAACAATTCAACAGTAAGAAAGGTTTTGTTTGAATGGTGTGCCATGAATGTGCCTATGCTTCTGCGTGATTGGGCCAGTTTTTCTACAGTATTAATATGAAGGTTGAAAATTTATGATTCTGCGCAACACAAAACAACTGTTTCAAAACTTTGAGTTTTTTAAGCAAAACTTTTATGCTACTTTTTCcattccattaaaaaaaatcttcatcaaATGTCGGGTAAATAAGTGTAACCACTCTGATTTTGCTCTACTATTAGCAGGATTGGAACTAGTGCTTCCACCATGGCAGGTTCAttaaaaaggatgttaaagactGCAGCCTTAAGCATTAAACATTAGCACATCTTTTGACTCCAGGAATCCGTTCTTCTtacatggattactcaattagatGGATTTTCTTACTGATGTTTTGACACGATCAAACCATTCTCCTGTGGTCAGCAGGACTATCATTTCTAAAATTAATAGAGGACAAAGGTCAGTTTATCCTAATAAATGTTCCATCTGTATGTATTTTATTGGATGACAATTTATGATTCTGAGcaacacaaaactgtttaaaatCTTTGAGTTTTTTTAGCAAAACGCTCATGCTACTTTTTtctattgtacaaaataaatggTCACTAAATGCCGGGTACACAAGTGTAACCGCTCTGCTTCTGCTCAGCCATGAGTGGATTGGAACTTGTGCTTCTGATATGACAGGTCCACTTATAATGGTTAAAGAATGCAGCCTTTAGCACATCTTTTGAGTCCAGGAATCCGTTCTTCATACATGGAAtactcaattaaattgatttGGTTATTGATTTGACAGGATCAGCAGgactataatttaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-201 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like).

Ensembl:

ensembl_id ENSDART00000135406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044786 lncRNA upstream 122708 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042733 lncRNA upstream 532816 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00042721 lncRNA upstream 1190785 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044785 lncRNA upstream 1394487 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00042740 lncRNA downstream 400001 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 758684 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00044788 lncRNA downstream 810789 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044789 lncRNA downstream 1224656 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00044790 lncRNA downstream 1225303 12674050 ~ 12830266 (+) True XLOC_021518
TCONS_00042732 mRNA upstream 519894 10805188 ~ 10827419 (+) False XLOC_021504
TCONS_00042730 mRNA upstream 760056 10469955 ~ 10587257 (+) True XLOC_021502
TCONS_00042727 mRNA upstream 897864 10396889 ~ 10449449 (+) False XLOC_021501
TCONS_00042738 mRNA downstream 220362 11669109 ~ 11861393 (+) False XLOC_021507
TCONS_00042739 mRNA downstream 220590 11669337 ~ 11859349 (+) False XLOC_021507
TCONS_00042742 mRNA downstream 624233 12072980 ~ 12106839 (+) True XLOC_021509
TCONS_00042744 mRNA downstream 686092 12134839 ~ 12150475 (+) False XLOC_021511
TCONS_00042746 mRNA downstream 686099 12134846 ~ 12138175 (+) True XLOC_021511
TCONS_00042731 other upstream 740767 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042724 other upstream 995740 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 996884 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 1188412 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 1619881 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042741 other downstream 486837 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 634810 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 686092 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 765220 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042766 other downstream 1993861 13442608 ~ 13442722 (+) True XLOC_021525

Expression Profile

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