RNA id: TCONS_00044790


Basic Information

Item Value
RNA id TCONS_00044790
length 1171
lncRNA type antisense_over
GC content 0.30
exon number 2
gene id XLOC_021518
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12673403 ~ 12830266 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGTAAAGACATGATGTTGACTGCTGTAAACAGACGTGTATTAAGATTTACGATCAAAACAGTTTGGTAATATGTTTAGGTGTCCGTTTTGTGTGAATATTTTGAGAGCTTTACACATGATACACACTCATCTGCAAAGTCACAAACCTCGCACAGTTTATCACGAACGTAAGTACTAGTTATTTTGCGAtatgcattttaatataatttgtttgtGTCATATGTGATGACGTGAACAGCGATCTCTCATAGAAATCTGACACATGCCAATGTGTACGTGCAAATTAGCCTTATATAtaacattcatgtttattttacaacACTTGTCATTTATGAACATGCATTtagaaatataacaaatatgtTCACTTAGAGAAAAAAAAGTCCACTAAAATCATAGTATAAAATATAGGCTAGCTAGGAACAtgcatgtacatatttgtaattccaatagTTGAAAACATAAGTGGACTTttttgcaacatttcacaatatttGTTGCATATATAACACATTTTATGCAAGTAAAATtcaaatatgaatttgtatgtcaagtaatttcatattttttatctATGCATAAGGGATGTtacttttttgttaaatttgaaaCTTCTTATTTTAAACATGCTTTACTTTAAATGATGTTAATACATGACTTTTTTATGATGATTCTTGcagatttataatttatattttatatttgtttacttgtttatatatattttataacattacCCAGGACATTCCAATGTAGTGTTTCTCCAATAACTTTGAAGTCTTTGCTCATGGTAAGTTTTACAATGTACAATGACAACTGCATAATTTTAGAACTAAACATCTTTTACTTTTAGCCTTGTACATTGCTCCTGAGGTTGGGTTTGACTATTCTGAGGTGAGtctttgctcaacactttgttaGCCAGTATAAAAGAAGAATTTTATATCTTTTTAGtaattgtctttttatttaaaacaggctATATGACTTGCATAAGGAGATTGTGGTGTGGGTTCTTGCTTGAAGACTCAcggtaaataaaaaatctttttatacAATTAAAGTGATGTCAGTTAGCACTTTGCAATTAATTTTTGTCTTCCCTCAAGGTCTCCTTAAGAACGAAAAAGACCCAGAAATGTATAGAGCTTATCTTGGGCATCTGTACTC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044788 lncRNA upstream 395002 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044787 lncRNA upstream 466091 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00042740 lncRNA upstream 822156 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00042736 lncRNA upstream 1299366 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00044786 lncRNA upstream 1449445 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042759 lncRNA downstream 9834 12840100 ~ 12853164 (+) False XLOC_021521
TCONS_00042762 lncRNA downstream 85793 12916059 ~ 12919734 (+) False XLOC_021522
TCONS_00044793 lncRNA downstream 794647 13624913 ~ 13625531 (+) True XLOC_021528
TCONS_00044659 lncRNA downstream 825769 13656035 ~ 13656319 (+) True XLOC_021529
TCONS_00044794 lncRNA downstream 1014291 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00042756 mRNA upstream 61116 12545114 ~ 12612934 (+) False XLOC_021517
TCONS_00042757 mRNA upstream 111204 12545182 ~ 12562846 (+) True XLOC_021517
TCONS_00042753 mRNA upstream 184049 12454542 ~ 12490001 (+) False XLOC_021516
TCONS_00042758 mRNA downstream 9814 12840080 ~ 12897576 (+) False XLOC_021521
TCONS_00042760 mRNA downstream 9910 12840176 ~ 12863555 (+) False XLOC_021521
TCONS_00042761 mRNA downstream 22389 12852655 ~ 12897815 (+) True XLOC_021521
TCONS_00042763 mRNA downstream 85796 12916062 ~ 12934871 (+) True XLOC_021522
TCONS_00042764 mRNA downstream 293819 13124085 ~ 13332863 (+) True XLOC_021523
TCONS_00042749 other upstream 455675 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 523383 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 590379 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042741 other upstream 738350 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042731 other upstream 2067504 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042766 other downstream 612342 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042770 other downstream 773952 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042779 other downstream 1637737 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 2522867 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 2919752 15750018 ~ 15751546 (+) True XLOC_021546

Expression Profile

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