Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042759 |
| length | 746 |
| lncRNA type | retained_intron |
| GC content | 0.38 |
| exon number | 2 |
| gene id | XLOC_021521 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 12840080 ~ 12897815 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051276 | chromosome organization | biological_process |
| GO:0007064 | mitotic sister chromatid cohesion | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0008278 | cohesin complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-57 | Predicted to enable DNA binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be located in chromosome and membrane. Predicted to be integral component of membrane. Predicted to be part of meiotic cohesin complex. Predicted to be active in nucleus. Is expressed in several structures, including cranium; digestive system; nervous system; optic cup; and otic vesicle. Used to study Cornelia de Lange syndrome. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 2 and developmental and epileptic encephalopathy. Orthologous to human SMC1A (structural maintenance of chromosomes 1A). |
| ensembl_id | ENSDART00000126382 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044789 | lncRNA | upstream | 9834 | 12673403 ~ 12830266 (+) | False | XLOC_021518 |
| TCONS_00044790 | lncRNA | upstream | 9834 | 12674050 ~ 12830266 (+) | True | XLOC_021518 |
| TCONS_00044792 | lncRNA | upstream | 139686 | 12698971 ~ 12700414 (+) | True | XLOC_021520 |
| TCONS_00044791 | lncRNA | upstream | 164679 | 12674927 ~ 12675421 (+) | True | XLOC_021519 |
| TCONS_00044788 | lncRNA | upstream | 561052 | 12259536 ~ 12279048 (+) | True | XLOC_021514 |
| TCONS_00042762 | lncRNA | downstream | 62895 | 12916059 ~ 12919734 (+) | False | XLOC_021522 |
| TCONS_00044793 | lncRNA | downstream | 771749 | 13624913 ~ 13625531 (+) | True | XLOC_021528 |
| TCONS_00044659 | lncRNA | downstream | 802871 | 13656035 ~ 13656319 (+) | True | XLOC_021529 |
| TCONS_00044794 | lncRNA | downstream | 991393 | 13844557 ~ 13847704 (+) | False | XLOC_021532 |
| TCONS_00044795 | lncRNA | downstream | 991590 | 13844754 ~ 13850492 (+) | True | XLOC_021532 |
| TCONS_00042756 | mRNA | upstream | 227166 | 12545114 ~ 12612934 (+) | False | XLOC_021517 |
| TCONS_00042757 | mRNA | upstream | 277254 | 12545182 ~ 12562846 (+) | True | XLOC_021517 |
| TCONS_00042753 | mRNA | upstream | 350099 | 12454542 ~ 12490001 (+) | False | XLOC_021516 |
| TCONS_00042763 | mRNA | downstream | 62898 | 12916062 ~ 12934871 (+) | True | XLOC_021522 |
| TCONS_00042764 | mRNA | downstream | 270921 | 13124085 ~ 13332863 (+) | True | XLOC_021523 |
| TCONS_00042765 | mRNA | downstream | 522195 | 13375359 ~ 13516852 (+) | True | XLOC_021524 |
| TCONS_00042767 | mRNA | downstream | 674889 | 13528053 ~ 13600004 (+) | False | XLOC_021526 |
| TCONS_00042768 | mRNA | downstream | 675386 | 13528550 ~ 13599156 (+) | False | XLOC_021526 |
| TCONS_00042749 | other | upstream | 621725 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
| TCONS_00042745 | other | upstream | 689433 | 12134839 ~ 12150667 (+) | False | XLOC_021511 |
| TCONS_00042743 | other | upstream | 756429 | 12083557 ~ 12083671 (+) | True | XLOC_021510 |
| TCONS_00042741 | other | upstream | 904400 | 11935584 ~ 11935700 (+) | True | XLOC_021508 |
| TCONS_00042731 | other | upstream | 2233554 | 10601324 ~ 10606546 (+) | True | XLOC_021503 |
| TCONS_00042766 | other | downstream | 589444 | 13442608 ~ 13442722 (+) | True | XLOC_021525 |
| TCONS_00042770 | other | downstream | 751054 | 13604218 ~ 13604320 (+) | True | XLOC_021527 |
| TCONS_00042779 | other | downstream | 1614839 | 14468003 ~ 14470571 (+) | True | XLOC_021539 |
| TCONS_00042786 | other | downstream | 2499969 | 15353133 ~ 15353249 (+) | True | XLOC_021542 |
| TCONS_00042789 | other | downstream | 2896854 | 15750018 ~ 15751546 (+) | True | XLOC_021546 |
