XLOC_021522 (si:dkey-150i13.2)


Basic Information

Item Value
gene id XLOC_021522
gene name si:dkey-150i13.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12916059 ~ 12934871 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042762
TGAGAGCAGATGGTCAAAGAGCAGACAGCTCTGATGTAGTTGTATGTAGTTGATGTAGTGTAcctttgttgaaattttgttagaattgtagaaataataataatggatactGTGGAGTCAGACAGAAGAGTTTCTCCTCTGAAGAATTTTGTGGCAGGAGGGTTTGGTGGCATATGTCTCTTACTTGCTGGACATCCGCTGGACACAATCAAGGTCCGTCTACAAACACAGGACTGCGCTGTCTACAAAGGAACATTTGACTGCTTTCGAAAGACTGTGTCCAAAGAGGGAATATTTGGCTTGTATAAAGGAATGGGTGCTCCACTAGCTGGTGTAACTCCAATGATGGCTTTGAATTTCTTTGGCTTTGGACTGGGAAAGGAACTTCTGCAACGTGACCCAACTGTACCAGCAACGTACACACAGATCTACTTGGCTGGGATGCTGGCAGGGGTGTGCACCACTGTGATTGTGGCCCCAGGAGAGAGAATCAAGTGTTTACTTCAGATCCTGCCCCTGGCTGGTCGAATGAAGTATACTGGACCATTAGATTGTGCTGTCAGACTTTATAAACAACAGGGCATTTGCAGTGTCTACAAGGGAACTATTCTTACTTTAATCAGAGGTGTGTGCACTGTACAGTGGTAAATATCATTGATTGTTTTCACTTAAACTTTGATTGACAACCCCAATCactgtgttaaatttaaaaatgacat
>TCONS_00042763
GAGCAGATGGTCAAAGAGCAGACAGCTCTGATGTAGTTGTATGTAGTTGATGTAGTGTAcctttgttgaaattttgttagaattgtagaaataataataatggatactGTGGAGTCAGACAGAAGAGTTTCTCCTCTGAAGAATTTTGTGGCAGGAGGGTTTGGTGGCATATGTCTCTTACTTGCTGGACATCCGCTGGACACAATCAAGGTCCGTCTACAAACACAGGACTGCGCTGTCTACAAAGGAACATTTGACTGCTTTCGAAAGACTGTGTCCAAAGAGGGAATATTTGGCTTGTATAAAGGAATGGGTGCTCCACTAGCTGGTGTAACTCCAATGATGGCTTTGAATTTCTTTGGCTTTGGACTGGGAAAGGAACTTCTGCAACGTGACCCAACTGTACCAGCAACGTACACACAGATCTACTTGGCTGGGATGCTGGCAGGGGTGTGCACCACTGTGATTGTGGCCCCAGGAGAGAGAATCAAGTGTTTACTTCAGATCCTGCCCCTGGCTGGTCGAATGAAGTATACTGGACCATTAGATTGTGCTGTCAGACTTTATAAACAACAGGGCATTTGCAGTGTCTACAAGGGAACTATTCTTACTTTAATCAGAGATGTGCCCTCAAATGGTGTATACTTTCTAACATATGACTACTTAAAACACTATCTGACCCCTGATGGAGAATGTGTTCATCACCTCAGCACATCCAGAGTTCTTCTTGCTGGTGGGATTGCTGGCATGATAAACTGGCTAATTGCTCTGCCTGCAGATGTGCTGAAGTCAAACTACCAATCAGCCACAGACGGGCGTTACCAAGGTGTAAGACATGTGTTAAGAACACTGTTAAAGGAGGAAGGAGCTCAAGGACTCTACAAAGGCTTTAGCGCAGTTATGTTACGAGCATTTCCTGCTAATGCGGCTTGTTTTCTAGGTTTTGAGGTTGCTCTAAAGTACTTAAACTACATTGCTCCAGACTGGTGATGTCACATTTAGAATTGATGTGGGttcttattttaatacatttacccTCTGTTATATATAGCATTTCTTCATTGAAGGGCAGGCAGGCATGGTGGCCCAGTAATGCACAACACAACAACATTTCAAAAAGCATACATTAAGCTCACAACTCAGTGAACTTTTAGAAAGcaaacattggctgtttctcaattccaagaatgcaagTACTTCCAGGTGTcgagaacgaactcgggagaccacgagaacagagaacacgtcctgtgagaaacattacaacattcatacaatgatttattgtttttccccttttcaaaatatatactattcataaaaactttataaatatacgttgcacaatataaataaaaaatatttgaatacaaatttcagcaaataacCACTgtcaatgtgtttattattttattaagatgttcatggtagttttctttcaccgtttcatttagggaaacctAAATCAATAATATctctcctgagataaataagttctatctctgaactttaataataaatctaaataaattgctgcgcttcccacctccagtcccaatgacttctgggacttctagagcgagttcggtgTTCAAGTCTGCATtgatgcatcctcgatatcaagaacgcATCTGGGAAATTTCACGCGTACTcggttcttgcggtcttgagtattagaattaaactttggcagctgatgatgacattacacgagaacacgaggacgcaagccCATTAAACTTACAACGCAATGAAAATGCTCCCAACCACTAGGTGGCAGAGGAACACAGATTACTTCTGGTTGAATGGAACAGCAATAATCTCTAGACACCACAAGAAATCTGTTACAATTTGTTGCTACCAATGAGCAAGAAGTGGGTTTTACCTCAGGTCATGATCGTCTGCAACTTCTGTGTAATGAGCGAATACCCATGAGATTAGGGTTAccacttttaatacaaaaaaataagggACGCATACTGCAGCAGGGGCCACATCCCTAATCACATGCCCAATAGCATGTCAGTGTTGGTAAATCGcaacttaaaatatgttttcaggAAAGTGTAAACACGTAGACATTGAAATAAACTAGTCTTTAATTGACATCTGTGTGAACAGATGCAGTCAGTATTTCTTTTTTACAACTCTCCAACACTGATAAAGCTGATGTTATGTTTAATAGTGTGGTACACCTGTGTTAACTTAGTTGCTGTAACCTAGAGGAGAGAAAATACTAATGAACCTAATTTTAAAGGGTGGTATTGATAacagattttggctaaaatatttgtcattatttgcagTATCATCTAACAAAAGCACATACATAAACTAgatacaaacaagtgtgtttctTTTGTTCTGTTGTCCTGTAGACACCTTTCTGCTGAGAGAACATCTGAAAGAATGTTGAAAACGAGTACTGAAACGAGTAAGAGTAATGAAAGCTTAAAGTTTGCTTTCGGAAATTTTGCTGTGTTGTGAGTTAATGATTGCTTTATAAAATGCCATTGTGCTGTGCACTACTGGGCCCATGtagacagaaagagaaaaaacTAATTGGACTCAGTTTTCCTTATTTCATTAAAAATCTACTCGCAATTCTA

Function

symbol description
si:dkey-150i13.2 Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0010876 lipid localization biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009611 response to wounding biological_process
GO:0006979 response to oxidative stress biological_process
GO:0009888 tissue development biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0015918 sterol transport biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0055085 transmembrane transport biological_process
GO:0055088 lipid homeostasis biological_process
GO:0055092 sterol homeostasis biological_process
GO:0044872 lipoprotein localization biological_process
GO:0030301 cholesterol transport biological_process
GO:0061061 muscle structure development biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042060 wound healing biological_process
GO:0042953 lipoprotein transport biological_process
GO:0042383 sarcolemma cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0034361 very-low-density lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0034362 low-density lipoprotein particle cellular_component
GO:0034385 triglyceride-rich plasma lipoprotein particle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:0120015 sterol transfer activity molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0070325 lipoprotein particle receptor binding molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-157 Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000071052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042762 False 719 lncRNA 0.43 5 12916059 12919734
TCONS_00042763 True 2609 mRNA 0.39 9 12916062 12934871

Neighbor

gene id symbol gene type direction distance location
XLOC_021521 smc1al coding upstream 18244 12840080 ~ 12897815 (+)
XLOC_021518 NA coding upstream 85793 12673403 ~ 12830266 (+)
XLOC_021520 NA coding upstream 215645 12698971 ~ 12700414 (+)
XLOC_021519 NA coding upstream 240638 12674927 ~ 12675421 (+)
XLOC_021517 si:zfos-452g4.1 coding upstream 303125 12545114 ~ 12612934 (+)
XLOC_021523 samd10b coding downstream 189214 13124085 ~ 13332863 (+)
XLOC_021524 ZNF512B coding downstream 440488 13375359 ~ 13516852 (+)
XLOC_021525 CR749171.1 coding downstream 507737 13442608 ~ 13442722 (+)
XLOC_021526 uckl1b coding downstream 593182 13528053 ~ 13600004 (+)
XLOC_021527 dre-mir-1388 coding downstream 669347 13604218 ~ 13604320 (+)
XLOC_021514 NA non-coding upstream 637011 12259536 ~ 12279048 (+)
XLOC_021510 AL929345.3 non-coding upstream 832388 12083557 ~ 12083671 (+)
XLOC_021528 NA non-coding downstream 690042 13624913 ~ 13625531 (+)
XLOC_021529 NA non-coding downstream 721164 13656035 ~ 13656319 (+)
XLOC_021532 NA non-coding downstream 909686 13844557 ~ 13850492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000220_00326553_00341983 NA coding CI01000220 null 325008 ~ 342251 (+)