XLOC_021523 (samd10b)


Basic Information

Item Value
gene id XLOC_021523
gene name samd10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13124085 ~ 13332863 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042764
gcgtgtgtgtagacGCGTGCATTGATTTCTCCTGCTCCACGACAGATCTTTGCGCTCGGAGGAGTCGTTCAGGAGCACCAGCTCTTACTTCTACCGGAACGGACCGGACACCCGTGGGCATGGCAGACTCCCACTGAAGCCATCACGGAGAGATACGCGTTCATACCGACTATGGCTGTAGACGCTGCGTCCAGCTTCAGCTTCTGCCGGGCTGCGCTGGAGCACACGATCTCAGCAGAGGAGCTCAACTATCAGCTGCCACGCAGAGCTGGAGGAAACCTGACCTGGCATGAAGGACATGAGCAGAGGGTGACCAGGAGGACCGTCAAACTGCTCCAGCAGCCCGGCACTGAGGGAATACAGATCCAGCCAGGAGAGGCCTTTACTGTGTACCACACCAGCCCGACGCTCTCCAGCTTATGCAAACCCGTGGTGCTGTGGACCCAGCAGGACGTGTGTAAGTGGCTAAAGAAACACTGTCCCCACAACTACCTGACCTACGTGGAGGCCTTCTCTCACCACGCCATCACAGGTCGAGCGCTGCTGCGGTTGAATGGAGAGAAACTAGCAAGGATGGGGATCATCCAGGAGACACTGAGACAGGAGGTTCTGCAGCAGGTCCTACAGCTGCAGGTCAGAGAGGAGGTTCGCAACCTACAGCTGCTCAGCAGAGCTTCCTTCGGCAACATTTCTTAGCTCATCTGTCCTTTGGCAGCTCTCTCGACTTCCCGGCAGATACAGGAAGCCTTATTCCCAACTGTAACAGACATttcgaaagagagagagactctGCCTGCCTGTGGATCAATGGAGGAGACTGTTAACTCGACACAGGTTTAACTGACAGGACTGCCTTTTTATGAAGAAATTGATAGGATTTCAGAAACTCAAAAGGACAAAGGCTACTCTACAACTGTAATATAGTGATAAGATTCAAGTTTCACCTCATCTCTTTAAAACCTACAGCAGCAACCAGAGCCCTGTCAGACAGCACTTGGATCAAGACCTCTAAATGGATCCAAACGTGAAGTTGAACCGTGATCTCAGTTGATGTTATGGTGCGATTTGTCTCAGTAGCCTTGATTCCCCTCTGAGGTTTAAAGTGTTTGGATATCTGACAGCCTTGCTCTTTTAACCCAGCAACACTCACTCAACATGGACGTAGATGCAATGCTGAACAAATCCTGTTTCTACAAGTGTGGGAATAGACAATCCCTCCTCCTACCTCTCACGATAGATTGTATCATTCCATTTACAGTAGACTTGAGGCATGTCATTTGATTATCTGAAACTTCCACGCTACAGGCTAAAGGGACTTCCTCACTGATAAAAACAACTGCATCATTTCGAAGGACTTTCTTTTAAAATGGACTTTGAACATTGAATGTTAATACTATCAGATGTGCACACCTATAAAATGACCATTGTTTTGCTTTTCTTCTCAGGACGTTCATTTACATTCTATGCTGTAACCTTCATTTAAGTGTCATTTTCAAATCTTGCATACAATGTAGTTGTTCAGGTTTTCTCCTAATACAGAAAGAATATA

Function

symbol description
samd10b Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human SAMD10 (sterile alpha motif domain containing 10).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-179 Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human SAMD10 (sterile alpha motif domain containing 10).

Ensembl:

ensembl_id ENSDARG00000094377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042764 True 1549 mRNA 0.48 5 13124085 13332863

Neighbor

gene id symbol gene type direction distance location
XLOC_021522 si:dkey-150i13.2 coding upstream 189214 12916059 ~ 12934871 (+)
XLOC_021521 smc1al coding upstream 226270 12840080 ~ 12897815 (+)
XLOC_021518 NA coding upstream 293819 12673403 ~ 12830266 (+)
XLOC_021520 NA coding upstream 423671 12698971 ~ 12700414 (+)
XLOC_021519 NA coding upstream 448664 12674927 ~ 12675421 (+)
XLOC_021524 ZNF512B coding downstream 42496 13375359 ~ 13516852 (+)
XLOC_021525 CR749171.1 coding downstream 109745 13442608 ~ 13442722 (+)
XLOC_021526 uckl1b coding downstream 195190 13528053 ~ 13600004 (+)
XLOC_021527 dre-mir-1388 coding downstream 271355 13604218 ~ 13604320 (+)
XLOC_021528 NA coding downstream 292050 13624913 ~ 13625531 (+)
XLOC_021514 NA non-coding upstream 845037 12259536 ~ 12279048 (+)
XLOC_021510 AL929345.3 non-coding upstream 1040414 12083557 ~ 12083671 (+)
XLOC_021529 NA non-coding downstream 323172 13656035 ~ 13656319 (+)
XLOC_021532 NA non-coding downstream 511694 13844557 ~ 13850492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_00972210_01064592 SAMD10 coding CI01000021 null 971213 ~ 1064715 (+)