RNA id: TCONS_00042762


Basic Information

Item Value
RNA id TCONS_00042762
length 719
lncRNA type retained_intron
GC content 0.43
exon number 5
gene id XLOC_021522
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12916059 ~ 12934871 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGAGCAGATGGTCAAAGAGCAGACAGCTCTGATGTAGTTGTATGTAGTTGATGTAGTGTAcctttgttgaaattttgttagaattgtagaaataataataatggatactGTGGAGTCAGACAGAAGAGTTTCTCCTCTGAAGAATTTTGTGGCAGGAGGGTTTGGTGGCATATGTCTCTTACTTGCTGGACATCCGCTGGACACAATCAAGGTCCGTCTACAAACACAGGACTGCGCTGTCTACAAAGGAACATTTGACTGCTTTCGAAAGACTGTGTCCAAAGAGGGAATATTTGGCTTGTATAAAGGAATGGGTGCTCCACTAGCTGGTGTAACTCCAATGATGGCTTTGAATTTCTTTGGCTTTGGACTGGGAAAGGAACTTCTGCAACGTGACCCAACTGTACCAGCAACGTACACACAGATCTACTTGGCTGGGATGCTGGCAGGGGTGTGCACCACTGTGATTGTGGCCCCAGGAGAGAGAATCAAGTGTTTACTTCAGATCCTGCCCCTGGCTGGTCGAATGAAGTATACTGGACCATTAGATTGTGCTGTCAGACTTTATAAACAACAGGGCATTTGCAGTGTCTACAAGGGAACTATTCTTACTTTAATCAGAGGTGTGTGCACTGTACAGTGGTAAATATCATTGATTGTTTTCACTTAAACTTTGATTGACAACCCCAATCactgtgttaaatttaaaaatgacat

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0010876 lipid localization biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009611 response to wounding biological_process
GO:0006979 response to oxidative stress biological_process
GO:0009888 tissue development biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0015918 sterol transport biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0055085 transmembrane transport biological_process
GO:0055088 lipid homeostasis biological_process
GO:0055092 sterol homeostasis biological_process
GO:0044872 lipoprotein localization biological_process
GO:0030301 cholesterol transport biological_process
GO:0061061 muscle structure development biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042060 wound healing biological_process
GO:0042953 lipoprotein transport biological_process
GO:0042383 sarcolemma cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0034361 very-low-density lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0034362 low-density lipoprotein particle cellular_component
GO:0034385 triglyceride-rich plasma lipoprotein particle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:0120015 sterol transfer activity molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0070325 lipoprotein particle receptor binding molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-157 Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000141745

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042759 lncRNA upstream 62895 12840100 ~ 12853164 (+) False XLOC_021521
TCONS_00044789 lncRNA upstream 85793 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00044790 lncRNA upstream 85793 12674050 ~ 12830266 (+) True XLOC_021518
TCONS_00044792 lncRNA upstream 215645 12698971 ~ 12700414 (+) True XLOC_021520
TCONS_00044791 lncRNA upstream 240638 12674927 ~ 12675421 (+) True XLOC_021519
TCONS_00044793 lncRNA downstream 705179 13624913 ~ 13625531 (+) True XLOC_021528
TCONS_00044659 lncRNA downstream 736301 13656035 ~ 13656319 (+) True XLOC_021529
TCONS_00044794 lncRNA downstream 924823 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044795 lncRNA downstream 925020 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044796 lncRNA downstream 1008605 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00042761 mRNA upstream 18244 12852655 ~ 12897815 (+) True XLOC_021521
TCONS_00042758 mRNA upstream 18483 12840080 ~ 12897576 (+) False XLOC_021521
TCONS_00042760 mRNA upstream 52504 12840176 ~ 12863555 (+) False XLOC_021521
TCONS_00042756 mRNA upstream 303125 12545114 ~ 12612934 (+) False XLOC_021517
TCONS_00042757 mRNA upstream 353213 12545182 ~ 12562846 (+) True XLOC_021517
TCONS_00042764 mRNA downstream 204351 13124085 ~ 13332863 (+) True XLOC_021523
TCONS_00042765 mRNA downstream 455625 13375359 ~ 13516852 (+) True XLOC_021524
TCONS_00042767 mRNA downstream 608319 13528053 ~ 13600004 (+) False XLOC_021526
TCONS_00042768 mRNA downstream 608816 13528550 ~ 13599156 (+) False XLOC_021526
TCONS_00042769 mRNA downstream 614151 13533885 ~ 13566943 (+) True XLOC_021526
TCONS_00042749 other upstream 697684 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 765392 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 832388 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042741 other upstream 980359 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042731 other upstream 2309513 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042766 other downstream 522874 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042770 other downstream 684484 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042779 other downstream 1548269 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 2433399 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 2830284 15750018 ~ 15751546 (+) True XLOC_021546

Expression Profile

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