XLOC_021533


Basic Information

Item Value
gene id XLOC_021533
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13928339 ~ 13941278 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044796
CGGCTCGTGTTCGACTCTTTTCGGTTCTCGTTCGGCTAAGCTCGTTGTTGTTAAACAAGTTCTTCTCGTCAAAACAACTGTTTAATAGTCATGGCTTTCTTCGGAATCACATATCTGGGTTACCAGAACCCGTTTGGGGATAGGATGCTTCATTCTACCCAAAACAAACCAGATGCGCGAGACCCATCAGACCTGCATCTCGTCAGCCAGAACAGATATAAGGATCATCTGATCACCAGACACGCTCAGAGGTTGATGGCGATGGCTACTTGTTTGTCTTCAGCTTGCCTGGAGAAATGCTCCTCTCCGGGGAATtgtgggaaaccagaggaccTGTAGTGCACTGCTAACTGTTGGGAGGTCCGTCGTTCAGGAAGTAAGTGGTCATTTCACCCTTACCCTTCACC
>TCONS_00042773
TGTTCGACTCTTTTCGGTTCTCGTTCGGCTAAGCTCGTTGTTGTTAAACAAGTTCTTCTCGTCAAAACAACTGTTTAATAGTCATGGCTTTCTTCGGAATCACATATCTGGGTTACCAGAACCCGTTTGGGGATAGGATGCTTCATTCTACCCAAAACAAACCAGATGCGCGAGACCCATCAGACCTGCATCTCGTCAGCCAGAACAGATATAAGGATCATCTGATCACCAGACACGCTCAGAGGTCTCCAAAAGACCTGTATCGTGTACCTGTGACAGAAAACCAGCGGTACGGTTGGTGGATTCCCACTGGTGGCATGAAGAACCAGGAGCCATGGACTCAAACTCGCCACTTCCCACGCAAAAACAGCGAAATGACCAAGTTTGTGAATGAGATGTCAGTGACCAACCCAGACTTCAGTTTGTTTTGAAGACCAATACATGATCAAAAATGTGCAATCACAGTCCCATAATACATCTGTACTGCAGTTCATCACTTTGCCTTGCAGAACAGGAGGTGCAGTGGACACACTGCTGACATTAATGCAAGGGTAACATGTACCTGTACACACTCATGGGCCACACTGCATGTGCTAATTGTTATTCTTTGCACATACCTATAATATGGCAGTCAAGATTAGTTTTAGTAAATAAATTGAAaccaattttga

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0021983 pituitary gland development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044796 False 407 lncRNA 0.49 3 13928339 13941278
TCONS_00042773 True 671 mRNA 0.44 4 13928346 13932618

Neighbor

gene id symbol gene type direction distance location
XLOC_021532 NA coding upstream 77847 13844557 ~ 13850492 (+)
XLOC_021531 lmod3 coding upstream 105697 13814978 ~ 13822642 (+)
XLOC_021530 zbtb46 coding upstream 121844 13721826 ~ 13806495 (+)
XLOC_021529 NA coding upstream 272020 13656035 ~ 13656319 (+)
XLOC_021528 NA coding upstream 302808 13624913 ~ 13625531 (+)
XLOC_021534 cacnb3a coding downstream 156230 14097508 ~ 14180307 (+)
XLOC_021535 birc7 coding downstream 276230 14217508 ~ 14230506 (+)
XLOC_021536 NA coding downstream 292447 14233725 ~ 14235007 (+)
XLOC_021537 CR354537.1 coding downstream 328033 14269311 ~ 14270315 (+)
XLOC_021538 CR388373.3 coding downstream 491045 14432323 ~ 14541590 (+)
XLOC_021527 dre-mir-1388 non-coding upstream 324019 13604218 ~ 13604320 (+)
XLOC_021525 CR749171.1 non-coding upstream 485617 13442608 ~ 13442722 (+)
XLOC_021539 CR388373.1 non-coding downstream 526725 14468003 ~ 14470571 (+)
XLOC_021542 CR759764.1 non-coding downstream 1411855 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1536906 15478184 ~ 15478737 (+)
XLOC_021544 NA non-coding downstream 1537467 15478745 ~ 15483879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G115691 NA unknown CI01000021 null 1333998 ~ 1334409 (+)