XLOC_021534 (cacnb3a)


Basic Information

Item Value
gene id XLOC_021534
gene name cacnb3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14097508 ~ 14180307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042774
GCATGCACAAGAAACAGACACATTGCATTTGTCCACCTGTATTACTATCTTGATTTACGAAACCCAGCGCGAGGGAATTAATCAACGGCTCCGTGCGAATGCAGTCAAACAGAAGGCGGTTTTCCTGTTCAACCGTGATACTCTCTTCTTCCTCGGCGGTCATGTGTGTTTCGCATCGCTGTTTCTTCCAGTAAGCACCAATGCATGCATGCACCCGCCTCCCCTGCGCTCTCAAATAGATGGTGCAAGTAAAGATGTCCAAATCTTCCGCAGACCCTCTGTCTGGGGTAGAAAGCGCTTCTCAGTCGCACTATTTCCAGCTTCCACGAAAGTTGCCGAAACGCAAGGGTCGTTTTAAACGTTCAGATGGCAGCACATCTTCTGACACCACCTCCAGCTTCATCAAACGACAGGGTTCAGCCGATTCGTACACGAGCAGACCTTCGGATTCCGACCTGTCAGCGGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAACGCCAGGCCCAGCTGCAGCTCGAGAGAGCCAAGGTTACTGCAGCTCTCCTTTCATGTGCTTTTTCTGTTTTGCATGGTGGAAATAAACAAAGTATCATTGCGAGAGTAACTTCAGAATTTTAAGTGGTTAATGTCCTGACTCCAGTATTTTGTATGATGTATGAAGGTGCTAATGTTAATTTACACCTTGGCTTACTCACCAATTCACACTAAAGGCC
>TCONS_00042775
GCATGCACAAGAAACAGACACATTGCATTTGTCCACCTGTATTACTATCTTGATTTACGAAACCCAGCGCGAGGGAATTAATCAACGGCTCCGTGCGAATGCAGTCAAACAGAAGGCGGTTTTCCTGTTCAACCGTGATACTCTCTTCTTCCTCGGCGGTCATGTGTGTTTCGCATCGCTGTTTCTTCCAGTAAGCACCAATGCATGCATGCACCCGCCTCCCCTGCGCTCTCAAATAGATGGTGCAAGTAAAGATGTCCAAATCTTCCGCAGACCCTCTGTCTGGGGTAGAAAGCGCTTCTCAGTCGCACTATTTCCAGCTTCCACGAAAGTTGCCGAAACGCAAGGGTCGTTTTAAACGTTCAGATGGCAGCACATCTTCTGACACCACCTCCAGCTTCATCAAACGACAGGGTTCAGCCGATTCGTACACGAGCAGACCTTCGGATTCCGACCTGTCAGCGGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAACGCCAGGCCCAGCTGCAGCTCGAGAGAGCCAAGTCCAAACCTGTAGCATTCGCAGTGAAGACGAATGTGAATTATTGCGGGGCTCTAGATGAGGAATGTCCTGTTCAGGGTGCTGCCATAAACTTTGAAGCCAAAGACTTTCTGCACATTAAAGAGAAGTACAATAATGACTGGTGGATTGGAAGGCTGGTGAAAGAGGGGGCAGACATCAGCTTCATTCCCAGCCCCCTCCGACTGGAGGCCATGAGAATCAAACAGGAGCAGAAACAGCagagGAAAAGCGGTAACTCATCCTCAAGCCTGGGTGACATGGTTTCAGGGGGTTGGAGATCCACACCGCCATCTGCAGCCAAACAGAAGCTAAAGCAGACTGAACACATTCCTCCATATGATGTGGTGCCATCCATGAGGCCTGTGGTTCTGGTAGGACCGTCACTAAAGGGATATGAGGTGACAGACATGATGCAGAAAGCTCTGTTTGACTTTCTCAAACATCGCTTTGATGGACGGATTTCAATAACCCGAGTAACTGCTGACCTTTCACTGGCCAAGAGATCAGTTCTCAACAAGAGACCCATCATGGAGAGGTCAAACACACGGACCAGTTTGGCGGAAGTACAGAGTGAGATTGAGAGAATATTTGAGTTGGCCAAAACCCTTCAGCTGGTGATTCTGGATGCAGACACCATTAACCATCCAGCACAGCTAGCTAAAACCTCACTAGCACCTATTATTGTATATGTAAAGGTCACGTCTCCAAAGGTCCTACAGCGGTTGATAAAATCCAGGGGTAAATCACAGAGCAAACACCTCAATGTTCAGATGATGGCAGCAGATAAATTGACTCAGTGTCCCCCTGAGATGTTTGATGTCATTTTGGATGAGAACCAGTTGGAGGACGCCTGTGAGCATCTGGCTGAATATCTGGAGGTTTACTGGCGTGCCACTCATCTGCCAGGCACCACCCCTCTCAACCCGCTATTGGAGCAAAATTTGATGACCCCACCCTCTGCAATCTCCAGTCTACAGTTCTCTGAAACACAGGAATTAATTGAATGAGCACTTGCAAACCTGCGAACCAGCAGCTGTCGCCTGCCGGGGGTGGAGTGGgagtggaggaggaggagcagggaGAGCAGGACAGCCTCATGCCCTCCGACGAGGCCAGTGACTCTCGCTCCCTCCACCGAGGAGGCTCTAGCTCCCTGCATCCCCCAGAGGAcgaggaagaagaggaagaggaggaagatgATGATTACCAACCCCATCGCCACTCGAACCCCTACCGTGACGTTTACCCACCTAACCGTAACCACCCGGGTGGGATCCACAGTGCTAATGGACACGAGTCACAGGACCGACTCCTGCAGCAGCGAGACTCGCAGGACGGACACAACCAACGTAACAACCGACAGCGCTCGAGAGCCTGGCCGAGAGACAACTACTGACCGGTCAGCTGCAGGAGGGGGTTGAGTTGTGAATTGGGGTGAGGAACTGAAAAAGCAGTGTTAGTGGATGAAGGTTGATGAAAAGATCCTGTCGTTTTCTAAGCTCATGTGGTCGTCATCGTCTTTGGTGGCGCACGGCATGTGCTTTCAAAAGACAGAGCAGCTTTTCTCCTTTGAGATCAAATGCATGTTCGTTTTGAAATAATAATTGAGCTTCCTCTGAATACCCTAACCCCACCCAA

Function

symbol description
cacnb3a Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:1901385 regulation of voltage-gated calcium channel activity biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060221-2 Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).

Ensembl:

ensembl_id ENSDARG00000001881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042774 False 718 lncRNA 0.49 3 14097508 14142235
TCONS_00042775 True 2190 mRNA 0.51 15 14097508 14180307

Neighbor

gene id symbol gene type direction distance location
XLOC_021533 NA coding upstream 156230 13928339 ~ 13941278 (+)
XLOC_021532 NA coding upstream 247016 13844557 ~ 13850492 (+)
XLOC_021531 lmod3 coding upstream 274866 13814978 ~ 13822642 (+)
XLOC_021530 zbtb46 coding upstream 291013 13721826 ~ 13806495 (+)
XLOC_021529 NA coding upstream 441189 13656035 ~ 13656319 (+)
XLOC_021535 birc7 coding downstream 37201 14217508 ~ 14230506 (+)
XLOC_021536 NA coding downstream 53418 14233725 ~ 14235007 (+)
XLOC_021537 CR354537.1 coding downstream 89004 14269311 ~ 14270315 (+)
XLOC_021538 CR388373.3 coding downstream 252016 14432323 ~ 14541590 (+)
XLOC_021539 CR388373.1 coding downstream 287696 14468003 ~ 14470571 (+)
XLOC_021528 NA non-coding upstream 471977 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 non-coding upstream 493188 13604218 ~ 13604320 (+)
XLOC_021542 CR759764.1 non-coding downstream 1172826 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1297877 15478184 ~ 15478737 (+)
XLOC_021544 NA non-coding downstream 1298438 15478745 ~ 15483879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_01463736_01472529 CACNB3, CACNB3A, CACNB3B coding CI01000021 null 1463736 ~ 1472886 (+)
bowfin (Amia calva) AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding CM030126.1 CM030126.1 13815425 ~ 13823056 (+)