CI01000021_01463736_01472529 (CACNB3, CACNB3A, CACNB3B)


Basic Information

Item Value
gene id CI01000021_01463736_01472529
gene name CACNB3, CACNB3A, CACNB3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1463736 ~ 1472886 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_01463736_01472529.mRNA
GGTTCAGCCGATTCGTACACGAGCAGACCTTCGGATTCCGACCTGTCAGCGGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAACGCCAGGCCCAGCTGCAGCTCGAGAGAGCCAAGTCCAAACCTGTAGCATTCGCAGTGAAGACGAATGTGAATTATTGCGGGGCTCTAGATGAGGACTGTCCTGTTCAGGGTGCTGCCATAAACTTTGAAGCCAAAGACTTTCTGCACATTAAAGAGAAGTACAATAATGACTGGTGGATTGGAAGGCTGGTGAAAGAGGGGGCAGACATCAGCTTCATTCCCAGCCCCCTCCGACTGGAGGCCATGAGACTCAAACAGGAGCAAAAACAACAGAGGAAAAGTGGTAACTCCTCCTCAAGCCTGGGCGATATGGTATCAGGAGGTTGGAGATCCACGCCGCCATCTGCAGCCAAACAGAAGCTTAAGCAGACTGAACACATTCCTCCATATGATGTGGTGCCGTCCATGAGGCCTGTGGTTCTGGTTGGGCCTTCACTGAAGGGCTATGAGGTGACAGATATGATGCAGAAAGCTCTGTTTGACTTTCTCAAACATCGCTTTGATGGACGGATTTCTATAACCCGGGTGACCGCTGACCTTTCTTTGGCCAAGAGATCAGTTCTCAACAAGAGACCTATCATGGAGAGGTCTAACACACGCACCAGTTTGGCGGAGGTACAGAGTGAGATCGAGAGAATATTTGAGTTGGCCAAAACCCTTCAACTGGTGGTTCTGGATGCGGACACCATTAACCATCCAGCACAGCTAGCTAAAACCTCACTAGCTCCCATCATAGTGTATGTCAAGGTCACCTCTCCAAAGGTCCTGCAGCGGTTGATAAAGTCAAGGGGTAAATCACAGAGCAAACACCTCAATGTTCAGATGATGGCAGCAGATAAACTGGCTCAGTGTCCTCCTGAGATGTTTGATGTCATTTTGGACGAGAACCAGTTGGAGGACGCCTGTGAGCACCTCGCTGAATATCTGGAGGTCTACTGGCGTGCCACTCATCTGCCAGGCACCACCCCTATTAACCCCCTATTGGAGCAAAATCTGATGACCCCACCCTCGGCAATCTCCAGTCTTCAGATGACTACATTCCTGAAAAGGAACAAGTTTTGTGTTTTGCAGTCATATATGCATTGACCTAGTTAGACCAGAGTCCACCAGACTTAGTACAGAATGTTTCCTCATCGATCAGCCAGGAAAGTAGTCCAGAGACTGTGCTAAACATAATCATTGAGAATATAAAATGCCATATGTATCAGATTTGAGAAGTATATCTTATATCTGTGATGTGTGGATTCATGTCTGTATCCACTTTATTCAAGATCCTTTGAAATTAATTAAATTTAAATTATACAGCTGACCTCAAAAGTCAGGATGTTGCAGTTTCACTGAAAATGGGTTTAGGTCACAGCTGATTTTCACTGGTGTATGGGGCACAGTTTTAAAGGTAGACAGGAACTGTGGAACTTTGTTTTAATACATTTTTATTTGTAA

Function

symbol description
cacnb3a Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).
cacnb3b Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system and otic vesicle. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).
cacnb3 Contributes to voltage-gated calcium channel activity. Involved in calcium ion transport. Located in membrane. Part of voltage-gated calcium channel complex.

GO:

id name namespace
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04864 CACNB3; voltage-dependent calcium channel beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_01463736_01472529.mRNA True 1530 mRNA 0.47 12 1463736 1472886

Neighbor

gene id symbol gene type direction distance location
CI01000021_01332646_01333910 NA coding upstream 129785 1331665 ~ 1333951 (+)
CI01000021_01288735_01291953 LMOD3 coding upstream 171774 1288596 ~ 1291962 (+)
CI01000021_01274202_01280110 NA coding upstream 181977 1273594 ~ 1281759 (+)
CI01000021_01264188_01268643 NA coding upstream 194871 1262438 ~ 1268865 (+)
CI01000021_01219723_01256723 ZBTB46 coding upstream 206656 1219723 ~ 1257080 (+)
CI01000021_01506852_01513139 BIRC7 coding downstream 33330 1506216 ~ 1513306 (+)
CI01000021_01519982_01528860 GSS coding downstream 47096 1519982 ~ 1529105 (+)
CI01000021_01717640_01718394 NA coding downstream 244754 1717640 ~ 1718879 (+)
CI01000021_01771612_01785627 EXOSC10 coding downstream 298503 1771389 ~ 1785666 (+)
CI01000021_01977248_01980449 NA coding downstream 504053 1976939 ~ 1980506 (+)
G115856 NA non-coding upstream 13382 1443255 ~ 1450354 (+)
G115824 NA non-coding upstream 36972 1426475 ~ 1426764 (+)
G115817 NA non-coding upstream 53129 1410327 ~ 1410607 (+)
G115780 NA non-coding upstream 55285 1408203 ~ 1408451 (+)
G115791 NA non-coding upstream 77507 1384939 ~ 1386229 (+)
G115836 NA non-coding downstream 23550 1496436 ~ 1506142 (+)
G115870 NA non-coding downstream 43795 1516681 ~ 1516942 (+)
G115941 NA non-coding downstream 172713 1645599 ~ 1645878 (+)
G115959 NA non-coding downstream 199584 1672470 ~ 1672810 (+)
G115968 NA non-coding downstream 297086 1769972 ~ 1770203 (+)
G115519 NA other upstream 979772 480530 ~ 483964 (+)
G116236 NA other downstream 816931 2289817 ~ 2297195 (+)
G117237 NA other downstream 1764968 3237854 ~ 3243364 (+)
G117202 NA other downstream 1796258 3269144 ~ 3328233 (+)
G117484 NA other downstream 2483260 3956146 ~ 3957752 (+)
G117493 NA other downstream 2560114 4033000 ~ 4035676 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021534 cacnb3a coding NC_007134.7 CM002907.2 14097508 ~ 14180307 (+)
bowfin (Amia calva) AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding CM030126.1 CM030126.1 13815425 ~ 13823056 (+)