AMCG00008880 (cacnb3a,LOC107724200,LOC107696997)


Basic Information

Item Value
gene id AMCG00008880
gene name cacnb3a,LOC107724200,LOC107696997
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13815425 ~ 13823056 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008880
ATGTTACAGCAGGGAGCCCTTGACATAGGGgGTTCAGCCGATTCGTACACGAGTAGACCCTCGGATTCCGACCTGTCCCTGGAGGAGGACCGGGAGGCGTATCGGCGTGAAGCCGAACGCCAAGCCCTGCTGCAATTGGAGAGAGCCAAGACTAAACCAGTAGCATTTGCTGTGAAAACGACTGTCAATTACTGTGGGGCTCTAGATGAAGATTGTCCTGTTCAAGGTGCTGCTATCAACTTCGAAGCCAAAGACTTTCTACACATTAAAGAGAAATTCAACAATGACTGGTGGATTGGACGGCTAGTAAAGGAGGGGGCTGACATCACCTTCATCCCCAGCCCTGTGCGCCTGGAAGCCATGAGGCTGAAACAGGAGCAGAAGCAGAGGCAAATGGAACATGTCGACCCTTACGATGTTGTCCCTTCCATGAGGCCGGTGGTTCTGGTTGGTCCCTCATTGAAAGGCTACGAGGTGACAGATATGATGCAGAAGGCCCTGTTTGATTTCCTGAAGCACAGATTTGACGGCAGGATATCCATTACCCGGGTGACGGCTGACCTGTCCCTGGCCAAGAAGTCGGTCCTAACCAAGAGACACATCATCGAGAGATCCAACGCACGCTCCAGTCTCGCGGAGGTGCAGAGCGAGATTGAACGGATATTCGAACTGGCCAAGACCCTGCAACTGGTGGTCCTGGACGCAGACACCATCAACCACCCAGCACAGCTCGCCAAGACCTCACTGGCGCCTATCATCGTGTATGTCAAGGTATCCTCGCCCAAGGTGTTGCAAAGGCTTATTAAGTCTCGGGGGAAGTCCCAGAGCAAACACCTCAACGTGCAGATGATGGCAGCAGACAAACTGGCGCAGTGCCCCCCCGTGAGTACCCCCACACTGCACCTGGAAACAAAGGAGATGTTTGACGTGATCCTGGACGAAAACCAGCTGGAAGACGCCTGCGAGCACCTGGCCGAATACCTGGAGGTCTACTGGCGTGCCACTCACATGCCCGGCTCCGCCCCCATTAACCCCTTATTGGAGCAAAACCTGATGACCCCGCCCTCAGCTATCTCCAGCCTACAGGACCAGCAGCTGCTGTCAGGGGGGGAGCGTGGGGAGGAGCTTGGGGGGGCCCACTCCCCGGTGGAAAGGGACAGCCTGATGCAGTCTGACGAGGCCAGTGACACTGCGTCCCGGGGCCCGGCCTGGGGTGGGTCACGGCAGCTGGAGCAGGAGGAGTATGAGGGGCCCTACCCAGACCTGTACAAACCCCACCGCAACAACGGCACCAGCCTGCACAGCGCCAATGGCCACGAGTCCCAGGACAGGCTACTACAGCGCGAGGCAGAGCAGAGCCACAATGAGCGCAACAACCGTCAGCGCACCCGCCCCTGGCCCCGGGACAACtactga

Function

symbol description
cacnb3a Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).

NR:

description
calcium channel, voltage-dependent, beta 3a

GO: NA

KEGG:

id description
K04864 CACNB3; voltage-dependent calcium channel beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008880 True 1416 mRNA 0.58 11 13815425 13823056

Neighbor

gene id symbol gene type direction distance location
AMCG00008876 NA coding upstream 77341 13734974 ~ 13738084 (+)
AMCG00008877 NA coding upstream 95176 13688767 ~ 13720249 (+)
AMCG00008875 NA coding upstream 129520 13684568 ~ 13685905 (+)
AMCG00008870 NA coding upstream 177179 13629173 ~ 13638246 (+)
AMCG00008871 NA coding upstream 186948 13617051 ~ 13628477 (+)
AMCG00008885 NA coding downstream 76235 13899291 ~ 13904755 (+)
AMCG00008886 LOC107737655 coding downstream 83246 13906302 ~ 13921627 (+)
AMCG00008884 NA coding downstream 119767 13942823 ~ 13948990 (+)
AMCG00008883 NA coding downstream 134312 13957368 ~ 13983630 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding downstream 162115 13985171 ~ 14006013 (+)
G52100 NA non-coding upstream 127645 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 338447 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 500373 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 502967 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 504652 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 305431 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 719583 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 729840 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 737663 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 739389 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 505995 13306495 ~ 13309430 (+)
G51939 NA other upstream 557785 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 590479 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 822700 12980804 ~ 12992725 (+)
G51812 NA other upstream 888631 12925238 ~ 12926794 (+)
G52349 NA other downstream 658865 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 704762 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 915393 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 959987 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 984241 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021534 cacnb3a coding NC_007134.7 CM002907.2 14097508 ~ 14180307 (+)
grasscarp (Ctenopharyngodon idella) CI01000021_01463736_01472529 CACNB3, CACNB3A, CACNB3B coding CI01000021 null 1463736 ~ 1472886 (+)