CI01000021_01219723_01256723 (ZBTB46)


Basic Information

Item Value
gene id CI01000021_01219723_01256723
gene name ZBTB46
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1219723 ~ 1257080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_01219723_01256723.mRNA
ATGGCCCCATTTGGTAACACTCCACGTCCCTGCGATTTAGCCCCAACCAGGACGGCTTCTGTGCTGCTCATAGAGGATGCTAGTGGGGAAGTGAAGCCTATTGGGGATATCTGCATATATTCTCTCTTTCCTCTGTGCACGTTCAAGAACAATGCATTGCCTCATCTAGCTCTCCTCCCCCATCTCTCTATCTTAATGATTATAGCAGAGATGCTCAGGTGTTCACTGTTCAACCCTTTAATCATGATGTTTCTCTCTGTTCGCTTTATTAGCTGCCAAATAAAATCACCCAACTCTGTTCAGGAGAAGCAGCCACCCATTAGTCCAATGAATAACCGGAAGGAAGACATGGAGATCACGTCGCACTACCGGCAGCTCCTGCGGGAGCTGAACGAGCAGCGGCAGCACGGCATCCTGTGCGACGTGTGTGTGATCGTAGAGGGCAAAATCTTCAAGGCGCACAAGAATGTGTTGCTGGGCAGCAGCCGCTACTTCAAGACACTTTATTGTCAGGTGAAGAAGGGTTCAGAGCAGCAGGCCACCATCACGCACCTGGACATCGTCACAGCCCAAGGCTTCAAGACCATCCTTGATTTCATGTACTCTGCCCACTTGGCGCTCACAAGCAAGAATGTGATTGAGGTGATGTCGGCTGCCAGCTACCTGCAGATGACCGACATAGTGCAGGCATGTCACGGCTTCATCAAGGCAGCGCTAGACATCAGCATTCGCTCCGAGCTCGCAGATGAACTAGCGGATATTGAGATGGGTAACGTGGTGAGCTCTATCGGAGGCGGGGCTGGGCCTGGTGTGGGCGGAGCCTCGGAGGCACTGGCATCTATGATCTCGGCCCGCAGCTCCTCGCCGTGGCTGGCCAGGCGCACTAGTCCAGCAAATTCATCTGGAGACTCGGCCATCGCTAGCTGCCACGAAGGCAGCAGCAACTACGGCAAAGAGGACCAGGAACCCAAAAGCCATGAGAGCCAGGAGGATGCTTGTTTGCAGCCCTTGTGGCCTGCTGATTACCGCTCTGTCCAGGTCAAAGAGGAGCAGGTCTCCCCCTCCAATCTGCAAGACGGGGCTGGCCGAGGGGCACAAGGCACACCCGGAGAGCAAGGTGGAAGAGGAGAGGGGGGCTGGCAACCCCCTGGCTCGGGCCGCAGGAAGAACCGTAAGAACAAGGACACAGTCAGACACATAACCCAGCAGAATGAAGGGGACAGTCGGACAGCATCGCCACTACCATCCATGCTCTCCACCCCTGGCTGGAGCTACGGCAACCAGGACATTCCAGGAACCGAGGACTTGAAAAACGGCAAATTGCTTTGGATGTCATTTGATAATATGGGCCGTATCTCGATGCTCAGTGAAGATGGGAATATTGCTTGGTACACAATACAGGCTCAGGCTTGGGCGAATCAGATCAGGGTTTACTCCCTGTTGAAGAGGGGGGTTTCTGTGGTTTGCTGTGGCTGTGAACTTCATGCTATCTTTAGGGGGATTTTTGAGGCTGCTCATCAGCTCTATCTCTCGGTTTTTACACTCGCTCTCACTTCTCTCTCTCCGGGTCTCTATAGTCAAAAGTTTTGGAGATTTAGGACTTTCCTCTTTCATGCAGTACTTGCATCGATTGGAAATAGCTGCCCCAGGGAGTTACCAAGAGGGCCACCAAGTCAGCTAATTTGCCTGATTCTGAAAGGGAATACTTTGGGGTATTTTTTCAACCTAAGATGTGTATCACAGTGGGCTCATAACGACTATGGGAATGATCCCTCCTGTATCTCCATGTGGTGCATTGAGTGGGATGTAATGAACGGTGCAGAAGTGACGGAACCCAACATGTCCGACAGCCGCAGCGAGCGCATGGACCTCCTGGTAAAGCAGGAGGAGGCCGCAGCGGGGGACAGCGGTTTTCTGTCCGGGGAGCGGGATGAGGCCGTGGCCCAGGAGAGAGGGGGCTCGGTGGCCAACCTGCGTGCCGCCCTCATGAGCAAGAACAGCTTGCTGTCTTTGGGGGCAGAGATGCTCGGAGAGGAGAACCCGCTTCTGTTCGAATACCTGCCCAAGGGAGGACACTCTCTATCCCGGCATGAAGACTCTCCTATAGGTTTTGACAGGTCAGGGATTCCATAGGGTCCTGTAGGGACTTTTAGGTACTTATCTGCTGGGCTATATGTGCTATAGTGGAGTTTTTGTATGTTTTCTCTGTAAACATTGATGTTTCTAGAGGATCTATAGAGACTTGTATGTGGTCCTGCTAGAATGGTAAAGGCTGTATGTGCTGTCATTGAGTGCTTCAAGACTCACTGTTGTATTTTATGTGTCCACAAACCTTGGAGTTTCCATAGAATCTTATACAGGGACTCTTGGCTTGGGACTCATTTGTGCTCTTGATAGGATGGTATATGCTCTTTTGCTACCATCAAATGCTTAAAAACTGTCTTATAGGCTTCTGTATGCCTTTGTATACCTCTGTGCCCCTGTGTCTTA

Function

symbol description
zbtb46 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB46 (zinc finger and BTB domain containing 46).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_01219723_01256723.mRNA True 2490 mRNA 0.52 10 1219723 1257080

Neighbor

gene id symbol gene type direction distance location
CI01000021_01129847_01154032 UCKL1B, UCKL1 coding upstream 65415 1129847 ~ 1154308 (+)
CI01000021_01100408_01104630 NA coding upstream 115093 1100408 ~ 1104630 (+)
CI01000021_00972210_01064592 SAMD10 coding upstream 155008 971213 ~ 1064715 (+)
CI01000021_00822848_00831637 NA coding upstream 388043 822848 ~ 831680 (+)
CI01000021_00748689_00750893 AQP6, MIPB, MIPA, MIP coding upstream 468723 748141 ~ 751000 (+)
CI01000021_01264188_01268643 NA coding downstream 5358 1262438 ~ 1268865 (+)
CI01000021_01274202_01280110 NA coding downstream 16514 1273594 ~ 1281759 (+)
CI01000021_01288735_01291953 LMOD3 coding downstream 31516 1288596 ~ 1291962 (+)
CI01000021_01332646_01333910 NA coding downstream 74585 1331665 ~ 1333951 (+)
CI01000021_01463736_01472529 CACNB3, CACNB3A, CACNB3B coding downstream 206656 1463736 ~ 1472886 (+)
G115759 NA non-coding upstream 30012 1189482 ~ 1189711 (+)
G115754 NA non-coding upstream 34787 1184669 ~ 1184936 (+)
G115750 NA non-coding upstream 37775 1181724 ~ 1181948 (+)
G115685 NA non-coding upstream 104387 1110455 ~ 1115336 (+)
G115721 NA non-coding upstream 325764 893528 ~ 893959 (+)
G115684 NA non-coding downstream 54747 1311827 ~ 1316148 (+)
G115791 NA non-coding downstream 127859 1384939 ~ 1386229 (+)
G115780 NA non-coding downstream 151123 1408203 ~ 1408451 (+)
G115817 NA non-coding downstream 153247 1410327 ~ 1410607 (+)
G115824 NA non-coding downstream 169395 1426475 ~ 1426764 (+)
G115519 NA other upstream 735759 480530 ~ 483964 (+)
G116236 NA other downstream 1032737 2289817 ~ 2297195 (+)
G117237 NA other downstream 1980774 3237854 ~ 3243364 (+)
G117202 NA other downstream 2012064 3269144 ~ 3328233 (+)
G117484 NA other downstream 2699066 3956146 ~ 3957752 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021530 zbtb46 coding NC_007134.7 CM002907.2 13721826 ~ 13806495 (+)