CI01000021_01129847_01154032 (UCKL1B, UCKL1)


Basic Information

Item Value
gene id CI01000021_01129847_01154032
gene name UCKL1B, UCKL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1129847 ~ 1154308 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_01129847_01154032.mRNA
ATGTACAAGTACATGGACACACATTTTGTGGACATCTTGCGTTCTCGCCTGCTTCATGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCCTCTGTCAACACCAGCCTGTCTCCACGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCACTGCTGCGGACCAGTAAGAGGACTATCTACACAGCCGGACGTCCACCGTGGTACAATGAACATGGGACCCAGTCCAAAGAAGCTTTTGTTATTGGGCTTTGTGGAGGCAGTGCCTCAGGCAAAACAACAGTTGCTCGTAAAATTATCGAGGCTTTGGATGTTCCTTGGGTCGTTCTTCTGTCAATGGATTCCTTCTACAAGGTTCTGACGGCCGAACAGCAGCTGCTGGCTGCTAATAATGATTACAACTTTGACCATCCAGACGCCTTTGATTTCAGCCTGCTGGTGCACACTCTCCGCAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCAGTGTATGACTTCACCACGCATGGACGGCAGAAAGAATGGAAAACGGTGTATGGGGCTAGTGTGATTATATTTGAGGGCATCATGTCATTTGCCGATAAAGAGCTGCTGAAGCTGCTGGACATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACAGAGCGAGGCCGGGACATTGATGGAGTGATCAAACAATACAACAAATTTGTGAAGCCAGCCTTTGAACAATACATCGAGCCCACGATGAGACTGGCAGATATTGTGGTGCCACGTGGTGGCGGCAACATGGTGGCCATTGATCTTATAGTGCAGCATGTACACAGTCAGCTGGAGGAGTGCTTGTGTTTCAGAAATAAAGAGACCAGTCGAGACGAGTTCATCTTCTACTCCAAGAGGTTAATGCGGCTCCTCATCGAGAGAGCACTGTCCTTCCTTCCATCTCAGGTCCACATTGTTCAGACCCCACAAGGAGAGGATTATGAGGGCAGAACCTTCCATGGGAAGAGGAGATATTCAGGCCTTAAAAGGAAATCACACCCTTTTCTGTATTTTGAACAGATTACGGGTGTGTCAATTCTCAGGGCAGGAGAGACCATGGAGCCCGCGCTTAGAGCCGTGTGCAAAGACGTCCGCATTGGCAAAATCCTCATCCAGACCAATCAGGACACAGGAGAGCCTGAGCTGCACTACTTGCGTCTACCCAAAGACATCGGCGAAGATCATGTGATCCTGATGGACTGCACTGTGTCCACTGGGGCGGCAGCCATGATGGCCATCAGAGTGTTGCTGGATCATGATGTTCAGGAGGAGAAGATCCTGCTGGTTTCTCTGCTCATGGCTGAGATGGGTGTTCATTCCGTGGCCTACGCCTTCCCTCAGGTCAAAATCATCACCACCGCCGTCGACAAGAAGGTCAATGACCTCTTCCACATCATCCCTGGTATAGGTGAGACATTGCTTTATTTGCTTGACAGTGGTCTGATTACCTTCACGCCTTCAAGTTTAGGATTAAGTTACATTTACACAAACAGGCCTCTCACATAACATAGCCAACATATCTCACATAACCAGCCATATTTCACCCTAAATCATAAGAAATTATAAACTATACTTTGCTTAAAAAAAAAACATCGACTTATTTTTCAAGAGCCAGTAAGGTTTTTATCAATGTGACAATTAATTCATATATATTATTATTATATATTAATTGGGGTCAGTAATTTTTTTTTTTTTTTTTAAATGTATAATGTTACAAAAGATTTCTATTCCAAATAAATGCTGTTCTTCTTTTTCATCAAAGAATCCTGAATATATATATAT

Function

symbol description
uckl1b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and phosphorylation. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1).
uckl1 Predicted to enable uridine kinase activity. Predicted to be involved in pyrimidine nucleoside salvage. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0044211 CTP salvage biological_process

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_01129847_01154032.mRNA True 1836 mRNA 0.46 12 1129847 1154308

Neighbor

gene id symbol gene type direction distance location
CI01000021_01100408_01104630 NA coding upstream 25217 1100408 ~ 1104630 (+)
CI01000021_00972210_01064592 SAMD10 coding upstream 65132 971213 ~ 1064715 (+)
CI01000021_00822848_00831637 NA coding upstream 298167 822848 ~ 831680 (+)
CI01000021_00748689_00750893 AQP6, MIPB, MIPA, MIP coding upstream 378847 748141 ~ 751000 (+)
CI01000021_00699356_00722821 BAZ2A coding upstream 406870 699356 ~ 722977 (+)
CI01000021_01219723_01256723 ZBTB46 coding downstream 65415 1219723 ~ 1257080 (+)
CI01000021_01264188_01268643 NA coding downstream 108130 1262438 ~ 1268865 (+)
CI01000021_01274202_01280110 NA coding downstream 119286 1273594 ~ 1281759 (+)
CI01000021_01288735_01291953 LMOD3 coding downstream 134288 1288596 ~ 1291962 (+)
CI01000021_01332646_01333910 NA coding downstream 177357 1331665 ~ 1333951 (+)
G115685 NA non-coding upstream 14511 1110455 ~ 1115336 (+)
G115721 NA non-coding upstream 235888 893528 ~ 893959 (+)
G115681 NA non-coding upstream 246722 867315 ~ 883125 (+)
G115716 NA non-coding upstream 252464 876775 ~ 877383 (+)
G115697 NA non-coding upstream 271827 856335 ~ 858020 (+)
G115750 NA non-coding downstream 27416 1181724 ~ 1181948 (+)
G115754 NA non-coding downstream 30361 1184669 ~ 1184936 (+)
G115759 NA non-coding downstream 35174 1189482 ~ 1189711 (+)
G115684 NA non-coding downstream 157519 1311827 ~ 1316148 (+)
G115791 NA non-coding downstream 230631 1384939 ~ 1386229 (+)
G115519 NA other upstream 645883 480530 ~ 483964 (+)
G116236 NA other downstream 1135509 2289817 ~ 2297195 (+)
G117237 NA other downstream 2083546 3237854 ~ 3243364 (+)
G117202 NA other downstream 2114836 3269144 ~ 3328233 (+)
G117484 NA other downstream 2801838 3956146 ~ 3957752 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding CM030123.1 CM030123.1 42310632 ~ 42330478 (-)