G115519


Basic Information

Item Value
gene id G115519
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 480530 ~ 483964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU131221
CATCAACAATTGCTTCTTTTGTTTCAGCGGGGTCAGGTACACTGGCCTCCACCAGTGAAGAAGGCTGATGTTCCCCAGAGAGTTGTGGGGATGTTGCTGTGGAGGAGCCAGAAGTTGTAGTGGAAGGTCCTGGAGCAGCAGCAGCAGATGCAGCAACTGAAATTGCAGGCGAACTAGAGGGTGGCGAAGAATTAGCAACAGGACTAGACAGGTGAAGCATTCCAGAGGTAGAGGTTGGGGGTGGCATATTAGATGTTGGTGTAGAAGTAAGGACTGGAGAAAGAGAGGGCACAGGTTCAGGAGAAGACACTTTTGAAGGAAGTGGAGACTGCTGAGCTATTTGAGCAGCTGGAACAGTCACTGGAGCAGAAGGCTGGAGTGCAGATACCGTTTCAGATGTAACCACACAAGAAGCATGAGTTGTGGCAACATCTGCAGTTTTTCCTATCTGAGTGACAGGGGTTCGCTCTTTTTTATCACTGTCACTGCTTGAAGAGATGGTGAGTATAGTATTTTTGCTTACAACAGTCTGGACTGAACTGCTTTTGGCTAACATTGTTGTTGAAGACAGGGGACTTCTGCGGGCAACAGCTGTAGCCCCTGGGCTAGAGCAAGCAGGTGGAGAGGCTAAATGCTGTTGAAAGGGTGAGGACACACCAGAATGTAAGGATGACTGCCCAACAGGACTAGGTTTTGAGCCACTAGCATCAGAGACACTCTCCTGTTTTGGAACTCCAGGAGTTGGCTGTTGAGATGGTGGTACTACACTAACAGGGGAAGCCTGGCTTGCAGGTACTTGAACTTGAAGCTGCCCAATGACAGTGCGGCTCTGCTGAGTAGTTGTTGGCGCTGGTGCAGAGGGTGATGTAGTTGACACTGAGGTAGGAGTAAGATGGATTTTGGCAGAGACTATGGGACCAACCATTGTGACAGGCTGAGACATGACATTTGTACTTGATGGTACAGACGTAGCTTGAAATATTGAATACACAGGTCCTGTGATGAACTGTGGACGTGTTTGAGTAGGATTTTGTTGACGAACATCTGGAGATCTTATGTTTTTATTGGGAACTGCCAGTACCTTGGAAACGATAGCTGGAGGAACTACAGAAGCAGTGTTGGTAGCAGAGCTAATGGGATTGGAGGTTACAAAGACTGTGATCTGGTTTTGTGGAGTTGCTGCTGATGAGATGGGCCTTTGCAAAACTGTTTGAGATGCGTTTGAGATGGGTATTAGATTGTGATTCGAACTTACTGAAGGGTTGGGAATTGAAGTGAGGCTTAACAGCACAGCTTGGTTTGAACTAACACTTGATACAGCACTGACAGACTGCAGGTTTGCACTGCTACTGGAAACAAAATTTGGACTTGATACTGAAGCAGATTTAGGTTTTTGATCAGTTTCACTTGTAGACAAAGAGGTGCCAATATTTGTGCTCTGTGAGACAACAGGATTGGATTGGTTCTCCTGAGCTAGTGGCGCATGAGGGCTCAATTTCTGCACAGGGTCTCCACCCACTTGAGGAATATTTTGAGATTTCATTGACAAAGATGGGGTACCTGTATTGTCCAGTAGTTGATTCAGAGATGTTGGAGCATCTCTAAATGCTGGTGATGCAGCAGAGCCAAGGTCATGTTGTGGTGTTGTCCGAGGTTGTTGTTTATCTTCAGCACGCTGTTCAATCAAATTGTTAGGGTCTTGCCGTTTGGGTTCCTGAGATGGCACCCGAGGGCTTGCCATTTTAGGTGCAGACTGCTCTCTTAACTGAGCTGGCTGATGCTGCTCTGGTTGTGTAGCCAGTACATGGCCATCTCTAACTGTATCAGCACTGCCAGGTAGGGTTTGCACAGAATTTAAACTCTGTTGTGATTCTCCAGTTCCTGCTGATGGAAAAGATGCAGAGGTAGCTGGGAGCACTGAGTTGGGACTAACCATAATGTTCTGTGGACTAACCATGATTTGCTGCTGATGTGGAGGTGATGTCAGTGAAGTTTTGGGTTAAGACCTTGCTGATCAAAGCCTCGATTAAGGTTTGGCTGCCGCGGTGGCAGTGGAATGTTAATTTTTGGAGGGAAAAGACCAGCAATAGAGGCATTCAGTCTCTCAGGGGACAGATTTATTTCAGAGGGTTCAGTACTAGGTGGACGGTTGGTTGGAGTTAAAGGGTGGTGATATGGTCGGGGACTGGCTCGGTTAGGGGTTTTAGGGCGGGAACTTTGGGAAGTTGCAGGAGCACTGGGAAAGTGAATATTATGTGAGCCAGCCATTGCTGCCACTTGCTGAGACTGCTGTTGGGGACTTGCTCCTGGCTGGTGGGACACTGATAAAGGCACAGATTTCATTAAATGAGTATTAGGACCTTGGTTGGGAATCATTGGTTGATTTCCATTTCCAGACTGTTGACCAATTTCAAGGGGTCCCCGATCCTGCAAGCTATGGTTTCCAGGGGTTTCCTCTGGTGGTGTTGGTTGTCCAACCTCTGAAAGGGGTGTCCTTCTCGCTGGTCCTGTGAGAGATGGATTCACCATGAGTGGCATGCCTCTGGCTTTATCAGGAGAAGGTGGAACACCTCCATGCCCTTGAAGATCGATCATTACAGGCATGTTGCCCGGCTGCGATACAGGCATTCTCTGAGATGGATCACTGGGATTGACTAAACCCTTTGGAATGTGACCACCTTGCTGTAATGGCATTCGATTCTTAGCTTCTTGTTGCATTTTAAGCATCATCATCATTTGTTGTTGTTGCTGCTGCTGCTGATGTTGTTGCTGCTGTTGCTGCTGTGTCTGTTGTTGCTGCTGTTGTGGCTGTGACTGCAGTTGTTGTTGGAGGTGTTGTGGTGGCTGTTGTTGTTGCTGCATCTGCATTGACTGTTGTGAATGAATCTGGGTCTGGACATGATGGGTTCCTTGTGATGTTCCAGCTTGACCTTGAGGACCCTGCATACTCTGCATTTGTTGCTGTTGCATTTGCTGCTGTTGAATTTGTTGATGCTGTTGTTGCATCTGCTGCTGTTGCATCTGTTGCTGCTGCATCTGTTGCATCTGTTGCTGCTGCTGTTGTTGTAACTGCTGCTGCTGTTGCATTTGCTGCTGTTGTTGCATTTGCTGCATCTGTTGCTGCTGTTGTGGGGGCATAAACTGCATTGGCATTTGCTGTAATACCCTTTGATCTCCAGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU131221 True 3182 TUCP 0.48 2 480530 483964

Neighbor

gene id symbol gene type direction distance location
CI01000021_00440399_00440684 NA coding upstream 39574 440399 ~ 440956 (+)
CI01000021_00349073_00352551 NA coding upstream 127409 347775 ~ 353121 (+)
CI01000021_00336727_00346126 NA coding upstream 134138 336420 ~ 346392 (+)
CI01000021_00013488_00033205 NA coding upstream 445625 13058 ~ 34905 (+)
CI01000021_00558429_00561268 SNAI1B coding downstream 73831 557795 ~ 562087 (+)
CI01000021_00591222_00592439 NA coding downstream 106353 590317 ~ 592932 (+)
CI01000021_00680850_00686621 NA coding downstream 196886 680850 ~ 687286 (+)
CI01000021_00699356_00722821 BAZ2A coding downstream 215392 699356 ~ 722977 (+)
CI01000021_00748689_00750893 AQP6, MIPB, MIPA, MIP coding downstream 264177 748141 ~ 751000 (+)
G115528 NA non-coding upstream 1138 478692 ~ 479392 (+)
G115549 NA non-coding upstream 6171 473699 ~ 474359 (+)
G115548 NA non-coding upstream 8050 472179 ~ 472480 (+)
G115464 NA non-coding upstream 90356 389765 ~ 390174 (+)
G115447 NA non-coding upstream 145826 325007 ~ 334704 (+)
G115518 NA non-coding downstream 39907 523871 ~ 527659 (+)
G115566 NA non-coding downstream 58876 542840 ~ 543072 (+)
G115569 NA non-coding downstream 62356 546320 ~ 546582 (+)
G115581 NA non-coding downstream 88764 572728 ~ 573126 (+)
G115601 NA non-coding downstream 128025 611989 ~ 612386 (+)
CI01000021_01332646_01333910 NA other downstream 848609 1331665 ~ 1333951 (+)
G116236 NA other downstream 1805853 2289817 ~ 2297195 (+)
G117237 NA other downstream 2753890 3237854 ~ 3243364 (+)
G117202 NA other downstream 2785180 3269144 ~ 3328233 (+)
G117484 NA other downstream 3472182 3956146 ~ 3957752 (+)

Expression


Co-expression Network