XLOC_021536


Basic Information

Item Value
gene id XLOC_021536
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14233725 ~ 14235007 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044797
ttttttcaaatcagtgAATACAAACTCCAGAACTCAAGACTTCAACCCAATCCAATACTAAAATCTAAATGTGGCCATTTCTCCAACAAGAGGAGAGACTTACAGTATGACAGAAATCCTCCAAATGCAGATGTGAAAAGTTTGTCTTGTCATATCCAgcaagacttgaggctgtaattagAAACTGGGTTATCGGGTATGAACACTTATCTGGTTCTTGCTTTGCCTCTGAGGAgtaaactctccaggacaccggccctccaggaacaagtttgcaCACCCCTGATCTTGATGATCTGTGCGACAAGCCCTGCCTTTTGGAGAGTGTGTACAAGAATGACGTGCATCTGAAACAGCAAAATGTACcctaaataatgcattttagattCACCAAAGTCTAGACATCACCCTCTAATGGatgtgtcatctgaaacgtgcaacaaaatgtaccagAACAAAGTATTGAATGGTTTGCTAAAATGTAAGATGACGCATGTATTTCCAACAATCCTGAGCTGAAATATCCAggtttaaatggcattttaaatcTCTGTGTGTACTTTTAGACCCCACTGAACACTGAAATGTTTTACATTCTTGCTAAACATAGAATTTAGCTTGTGTCATACAAAAGTAAACGGGTTTAAAATCAAAACAGATCATATTGTGTCAATGTGTCTCATTCTATTACCTGTAAGAACATTGCACATATTTTCCTTAATGAAATGATTTGCATTGCACGTCTTTGTCAAAACTCTGCTTCTGTTTTATATTTCTAGTTTCGAAAACCTTTGAACTAGTGATCAAAGTCTTTAAATCAGTCACAAAACGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044797 True 832 lncRNA 0.38 2 14233725 14235007

Neighbor

gene id symbol gene type direction distance location
XLOC_021535 birc7 coding upstream 3219 14217508 ~ 14230506 (+)
XLOC_021534 cacnb3a coding upstream 53418 14097508 ~ 14180307 (+)
XLOC_021533 NA coding upstream 292447 13928339 ~ 13941278 (+)
XLOC_021532 NA coding upstream 383233 13844557 ~ 13850492 (+)
XLOC_021531 lmod3 coding upstream 411083 13814978 ~ 13822642 (+)
XLOC_021537 CR354537.1 coding downstream 34304 14269311 ~ 14270315 (+)
XLOC_021538 CR388373.3 coding downstream 197316 14432323 ~ 14541590 (+)
XLOC_021539 CR388373.1 coding downstream 232996 14468003 ~ 14470571 (+)
XLOC_021540 si:rp71-79p20.2 coding downstream 355476 14590483 ~ 14731892 (+)
XLOC_021541 exosc10 coding downstream 536972 14771979 ~ 14803801 (+)
XLOC_021529 NA non-coding upstream 577406 13656035 ~ 13656319 (+)
XLOC_021528 NA non-coding upstream 608194 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 non-coding upstream 629405 13604218 ~ 13604320 (+)
XLOC_021542 CR759764.1 non-coding downstream 1118126 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1243177 15478184 ~ 15478737 (+)
XLOC_021544 NA non-coding downstream 1243738 15478745 ~ 15483879 (+)
XLOC_021545 NA non-coding downstream 1514745 15749752 ~ 15756516 (+)

Expression


Co-expression Network