RNA id: TCONS_00042734


Basic Information

Item Value
RNA id TCONS_00042734
length 8097
RNA type mRNA
GC content 0.40
exon number 26
gene id XLOC_021506
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 11285662 ~ 11452312 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGCTCATTCATAGAGTgcgggaaaaaaaaagtttgtgagGCTTGCGTGTTTGTGTCATTCTGCTCATCTCTTCTGACAGGAGCTTAACGCCGACTTAAATCAGatctTTCTCTTGAAGGAGTCAGTAAGAAGCTCCTGACGAAAAGTACGAGTGTTTTGAGCATATCCTTCATCTTTCTCTGGCTGGGATGAGGGGGCTCAGGAGTCTCAGTGTTGGGCTCCTGTCGGCCTTCTTCTCCACCACCTTTGGTCTTTATTTCCCTCCTCACGTGGAGCAGCTGCCCACCATCACCGCTCAGACCTCAGGCACTATCATCGCCCTACCATATGATGAGCGATACATATTCAAGTGTGAAGCCAAAGGAAACCCAAGACCTACGTTCCGCTGGACAAAAGATGGGATGGATTTTGACCCACATAAAGACCCTCAGGTCACTACAGAAGAAAATACTGGAACCTTTGAGATaccaaataaaaaagataaagtgAAATACCAGGGAAAGTACAGATGTTACGCCTCCAACAAACTCGGAACTGCAACTTCAGAAGAAGCCGAATTTATTGTGCCTATGGTACCCAAGTTTCCCAAGGAGAAGATAGAGCCAATTGTGGTCACAGAGGGTGATTCGGTGGTTTTGGAGTGTAACCCGCCACAAGGGATTCCACCCTGGCAGCTGTACTGGATGACCAATGATCTCCGGCACATTGAGCAGAATGAGAGGGTGTCCATGGGCCTCAGTGGGAATCTGTACTTCTCTAATACGCTGGTGTCAGACAGTCATGATGACTACTGCTGCTTCGCCTCCTTCTTCAAAATACGCACAATCGTCCAGAAACCCCGCATGGTCCTCAAGGTCAAGCCAGttgatGCAAAGCAAGAGGATGGTGATGCCAAGATTGTTCAGGAGAGGAAGCCAAGCATCTTGGTTCCCTCCAGTCATTCAACGACTTTCCTGAAAAAAGGAGAAGAGCTGGAGCTGGAGTGTATTGCAGAAGGACTGCCTACACCGGAGGTAGAATGGATCAAGATATGGGGTGACTTACCAAAGCGCACGCAGATAAAGAACTTCGGAAAGCTTCTGACAATACCAAACATCAGAGAAGAGGACGAAGGAAAATACATGTGTAAAGCCAAGAATCAGCATGGTGAAGATGTGCATCATTTCCAGGTCGAAGTAGAGGAGCCACCGAGCTGGCAGAAGGAGCCGCTGAAGAGTCAGTTAGCATGGATTGGATCTGACATCCACATCAACTGTTCTGCTACCGGAAAACCGCAACCCACAATCACCTGGAAAAGAAACGGCAAGCCCCTCGATGATTTCCCTTCCACCCATCACAAAATGCTTGACGACAGAATAATCATACTCAAAGCGGAGCAGAAAGATACCGCTGTGTACCAGTGTGAGGCCTCCAACAAACACGGCAGCCTACTGGCCAATGCTAATGTGCTAGTCATGAATCACCCTCCTTTGATTCTGACGAGGAATTATCTGGAGTATGCAACCATGTTGGGCAAGAGTGTGATTATGGACTGCAATGTCTTTAGTTCACCACCTGCCACCCTTAACTGGAGAAGAGAAGACCCAGAGGGCTCTGTAGATGGAGAGAGATATTCTCTGCTGAAGAATGGCTCCCTGCAGATTCACAAAGTCGAGATGGAAGATATGGGCCAGTACAAATGCTTGGCAAACAACTCCGAGGGCACTGCAAGCATCACCACTGAACTTTTCATTAAAGATTCCACTAGGATCGTGGAGGCTCCTCAAGACATGAAGGTCATCCGGGGATCTGTGGCCGAGCTGGAGTGCCAGGTGGAGTGCGACCCGTCTCTGAGAAGAGAGCTGGAGTTCGTTTGGCTCAAAGATGGGATAAATATCCTCTCGAACTCCTCAGAAAGGTATTTTACAGATGAAGGAATTCTTCAGATATTCAACGTGAGTCACAGTGATCAAGGGAATTACACCTGTATTGTTCGAACATCACTGGACCAAGATACAGCTTCTGCATACATAACAGTCTTAGATGTCCCCGATCCTCCGGTTGAATTATTGCTCAGTGATCTGAAAGACCGCAGTGTGAAGCTCCATTGGGTGAACACCAGTGATCACAACAGTCCCATAACAGAGTTCATCATCCAGTACGAAGAGAGCCACTGGGAGCCAGAGAAGTGGAAAGATCTTCTTCGAGTGTCTAGCAGGAAGTTCTCAGCCCCCTTGGCTCTGTACTGCCACATTAACTACCAGTTCAGAGTCATTGCTGTCAATGAAATAGGGAGAAGTCATCCCAGTATGCCCTCAGGAAGATATAAAACACCTCCATGTGCTCCTGACAGGAACCCAGAAAACATTAAGATTGAGGGTCACCTGCCACATCAGATGGACATCAGCTGGGAGCCGCTCTTGCCGGTGGAGCACAACGGTCCCGGTCTGGAATACAAACTGAGCTACAGGCTCCTGGGTGTCGAGGACAGTTGGAAAGAGCAGATGGTAAAGAGACACTCTTTTGTGGTGCGAGACACCCCGACATTCGTCCCCTATGAAGTCAAAATCCAGGCCTTCAACCGCCACGGCTGGGCACCAGGACCCAAAGTGGTGACTGGTTATTCTGGGGAAGACTTGCCCTTGGTGGCTCCCGATAACGTATCTGCGGAGGTGTTGAACTCTACACTGCTGAAGGTCAGCTGGTCACCAGTGCCCCAAACCACCCTGAGGGGCCATCTTGGAGGATACACAGTGAACTACTGGCAAACTCAGAGTCTGTTGACCTCTAAGAAAATTCCCTCAGAGAGACAGTCTCTCACCATCCCTGGAAACAGGAGTCACACCATGGTGCCAGGACTGAAACCATTCTCTGAATATAGTCTGACTGTCAACGTCTTTAACCGGAGAGGGAATGGGCCCAGCAGCAGTCCCATCTCTTTCACAACTCCACAGGGAGTTCCTGAACAACCTCATTACCTGAAAGCCACAAACTTTCAGAAAGACGCCATCACACTGGTGTGGGCGCCTCCGCACGAAACCAACGGCCATCTCACAGGATACCTTCTGCAATACCAAACAGttgtAGATAATGAGACTCTGGGTGAGCTGAACTCTGTGAACATCTCTGGAGCAGACACGACACAGTGGGTTTTGCGTGATCTGCAGGAAGACAACTCATATAAGTTCTACCTGAGTGCGTGCACGCAGGTGGGCTGTGGGTCAGCCATCAGTGAGAAAGGAGGCACCGACCCTGCAGCATCTTCTAGCAGACAAGAGATGGGATCTCAGGAGTGGTTTGTGGGGATGATGTGCGCGGTGGCTTTGCTAACTCTGCTTGTCCTCATCGGCTGTTTTGTGCTCAAGAACAAAGGTGGCAAATACGCAGTAAAGGAAAAGGAGAACATTCCAGCTGATCCTGAATCTCATGGCATGGATGAAGAAACACCCTGTGAATACAGTGACAATGATGAGAAGCCGCTGAAGAGCAGCCAGCAATTGTTCCGAGACGCCACAGAGGATGATCGCAGTGAGGATAGCTCTGAGATATCAGAGGATGATGACTGCGAGTTCAATGAAGATGGGTCATTCATTGGTGAATACTCTGGGTACATGCGCAGGACGTCCACGGAGGTCAACGGATTGAATGGACATACCCCAGGAACTTCTTAACAGTGGCCCAATTTTATGAACTTTTTAAACAATTCAACAGTAAGAAAGGTTTTGTTTGAATGGTGTGCCATGAATGTGCCTATGCTTCTGCGTGATTGGGCCAGTTTTTCTACAGTATTAATATGAAGGTTGAAAATTTATGATTCTGCGCAACACAAAACAACTGTTTCAAAACTTTGAGTTTTTTAAGCAAAACTTTTATGCTACTTTTTCcattccattaaaaaaaatcttcatcaaATGTCGGGTAAATAAGTGTAACCACTCTGATTTTGCTCTACTATTAGCAGGATTGGAACTAGTGCTTCCACCATGGCAGGTTCAttaaaaaggatgttaaagactGCAGCCTTAAGCATTAAACATTAGCACATCTTTTGACTCCAGGAATCCGTTCTTCTtacatggattactcaattagatGGATTTTCTTACTGATGTTTTGACACGATCAAACCATTCTCCTGTGGTCAGCAGGACTATCATTTCTAAAATTAATAGAGGACAAAGGTCAGTTTATCCTAATAAATGTTCCATCTGTATGTATTTTATTGGATGACAATTTATGATTCTGAGcaacacaaaactgtttaaaatCTTTGAGTTTTTTTAGCAAAACGCTCATGCTACTTTTTtctattgtacaaaataaatggTCACTAAATGCCGGGTACACAAGTGTAACCGCTCTGCTTCTGCTCAGCCATGAGTGGATTGGAACTTGTGCTTCTGATATGACAGGTCCACTTATAATGGTTAAAGAATGCAGCCTTTAGCACATCTTTTGAGTCCAGGAATCCGTTCTTCATACATGGAAtactcaattaaattgatttGGTTATTGATTTGACAGGATCAGCAGgactataatttaaaaaaatttaaaaaaggaaaaatgtcaGTTTATCCAAATAAATGTTCCATCTGGATGTATTTTATTCCGTGACAATTTATGATTTTGAGcaacataaaataactgtttcaaaaaaaactttttttttttttttttttttttagcaaaacttTCATTCTAGttttttcattatataaaacaaatggtGACTAAAGTGCGAGCAAATAAGTGTAACTGCTCTGCTCTGCTATGAGCTGGGTTAGAAATacttcccaaacaacgacataactcacagctgaactatcatagtacgatgcattgtttggaACGATGCAGTGACGAGTGTTTttcaaaacccgtagtttctctatcgcagatccatcgcttgaaccacgttagttatattGTAAAATGCCCACAATGATGCtttaaacggggtggagtaacaacttctttagagaagaaccccgtAATTTCTTTCtgcaaattatattgtattacatgcacacgcattaaaataaaatccaatattagttttggtaaaaacatgcacttgttatctatattatttgaaatatatgtaaatggcacatttGGGACCTATGTTTACTTTACAAacattattgagaacattacataaaaccacttacaaaagctaacacatattttaatatatatgtcatataaaaaataaataatgaggctatttatcaAGAAATGACatgttatatttgttatttattaggaaattaaaaaaaatcttacttcaataataatattaataatgatgatgatgatcatagATATTAGTGTGTCTTTTGAGTCCAGGGGTTTGTTCTTCAAATGTGAATTACTAATTTAGCTGGATTTTATTATTGATGGATCATTTCGTTCCTTAAAACTTATCAGAGAGTTCTTGTCATAGGTCTgatagctcaaacctgctcagaACCAGGCTAAATTTAATATAAACCAGATTAGATTGTGTAATCTCAGGCAAAGGTGATGCTGAAAGTACTGTATGCACCAcctaatattttattacaatagTAACCTATATGTTATATACACTGTATTAAAaagttaaagttaatttaaagaTCAAACTAAATTTTTTGAAACAAAGGAACAGAAACTACCAAGGGGTGGTACTCACCAAGTGATTAAAagtgaacatttattaataactatGTAGGAATATGGGCTAATTTCAAGACACCAATTTGGACTTTTCAAATCAAAAGgcatacttttaaaaatgtacaaacccaGCTTAGtacaatttctgagagtgtatggaaaTGCACATGACCATGCTTTATagcctatagaccattttgagggatgtaaacaataacaatggtcttaAAGTAtttgctgttttacatttttaatatctatAGCTCCTGAGAATCCTAAAAGGtctacatattgataaataatgttaagaCCTTTTGtaaagttattaaaatagtttgacaacaagcagcaAATGTTCATGTTCCAAtggcatcaccacattgaaatggtctgtaTGGAATAACAGTTTATAGGAGTCATGCACATTTTTTGACAGCAAACAGGCATGTGATTTGATGAAGTGCAGGAGTTGCAGACACTTCTCAaacatcaaaaatgttttttttggtgaatttttttttttttaactgccagGTATGCCTTACGTCATGATCaagaaattttttaaaagtttgactaaataaatagctaaatgcTTGTAATTTTTGTGTACTGGAAAGTGTAAAGTCGTTTGCAGACtgcaaatgtggaaagttattgcataTCATATTAAACAAACGGTGTACTacaaattttaaagaattttgctcacatgggtAATTGAATATTAACCAGATGATGTTTTCACACAGCAGTGCTGTCAGCCAGTCATTGCATTGCTgaaaatgattttgaggatcaATAGATCTCTCCTTCATAGCCCTAGCAGTGATCACAGATCAGTTTGTTCAGTCTTTTAATCTGATTCATAAACTTatttaaagaaccaaattagccagaaatTAACTCATCTTAGATCATTAAGGCAAGGAATGAAGATCGGATTCCAGGGAAATGAGCTGTCTCTTAACTTTTACTAGTTGTCCTCTGTTATTCTCCCCTAAATCATCTCTTCCTTTCACGGTCAAGCTACCAATCTAAAAAACTGCAGGACGAGCAAATTATTTAGCGGTTTCATGAAACATTACTTGACCCAAAAATGTAGATTATTCCCTTTAGAATTAATGTGGATTTCATGGTTGCGTTTGGATTAGGTAACATTTTCACTTTTCCTGCTGAGGAAACATAAATAATTCATGGCCTGTCACAAAACTGATATCTTGACAGCACAATTTTCAGTTACATGTTCGCTTGTGTGGGCAATCACGTAACCTCTCCGCACGCCTCTCAGCAAGATACTGACACAATGAGACAAAACAATTATGTCCGGACTCTTCAGTATATctacaaaaacatatttctgtttgACCACGTGTTTGATTAAAACTGACATTGACGCcacaatggggaaaaaaaaataataataaaataaataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcgatttATAAAGGTCAACGGTGGAGATGTTAGTTGCCATATTTTTCTATTAGCAgtaataaaaatctgtttttgccaCAAATATTACAAAGAAGCGGCAGGTGGTTTATGTTATCAACACTAAGATTACCTTACTATTTTGAAAGATAAGACTCTTAAGTATGATCAATTCAAATACTTTTGGTGGATTCAGTAAAtcttatacatattttaaattatgttttgccTTCAAAATGAAATGATTAAAAAAGCAGAGGTGAGAGTTACTAATATTATGTTATTTCCAGGATGCAATCTGATGCTATGTAAGTCCAGCTTGAAATCCTgctaacatatttattattactgaGTGAAAAAAAAGCCCTTACACTGATAAATGAGATAAGACTTTTTTCTGCTTTTTGCTTCTACTTTGAGTTTTCtctgtagaaaaaaacaagctttCTGTTCTTGCGTTGTACATAtctgtatattttttctttgaatcctttttgcatttttgttttatgcattTCATTCTGCATAAAAGTACTGCTTATGAAGTCTCAGGAGGTGTTGTTATAGGATATTCTGCCATGAAATGGTTATCTCGATGCTATATTCAAACCTGAGAATTGTTTACTTCCACAAGTTGCTATATTTCTTATGCACAATACTATGAAACACTGACTGTCAAAACAGATTTTGTTACACTGAACTTACTTGAGTTCACTTCAACAATGAATAAGACAGTACAAATGcctattaaatgttttttagttTCTGTATAATCATTTTGTGTTGAGTTTTTCAttgatgttttaatttaacaGCTTATGACAATAATGTTTAGATGGGGCCTTGATTATGCAAATTGAAACTGCAAATCTCGAacttgcaatgtcagacacattgCATTCAATGGAGATAGTGACATAACagttaggggtagggttaggg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-201 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like).

Ensembl:

ensembl_id ENSDART00000111028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044786 lncRNA upstream 61057 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042733 lncRNA upstream 471165 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00042721 lncRNA upstream 1129134 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044783 lncRNA upstream 1332836 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA upstream 1332836 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00042740 lncRNA downstream 396436 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 755119 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00044788 lncRNA downstream 807224 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044789 lncRNA downstream 1221091 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00044790 lncRNA downstream 1221738 12674050 ~ 12830266 (+) True XLOC_021518
TCONS_00042732 mRNA upstream 458243 10805188 ~ 10827419 (+) False XLOC_021504
TCONS_00042730 mRNA upstream 698405 10469955 ~ 10587257 (+) True XLOC_021502
TCONS_00042726 mRNA upstream 832585 10396842 ~ 10453077 (+) False XLOC_021501
TCONS_00042738 mRNA downstream 216797 11669109 ~ 11861393 (+) False XLOC_021507
TCONS_00042739 mRNA downstream 217025 11669337 ~ 11859349 (+) False XLOC_021507
TCONS_00042742 mRNA downstream 620668 12072980 ~ 12106839 (+) True XLOC_021509
TCONS_00042744 mRNA downstream 682527 12134839 ~ 12150475 (+) False XLOC_021511
TCONS_00042746 mRNA downstream 682534 12134846 ~ 12138175 (+) True XLOC_021511
TCONS_00042731 other upstream 679116 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042724 other upstream 934089 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 935233 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 1126761 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 1558230 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042741 other downstream 483272 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 631245 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 682527 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 761655 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042766 other downstream 1990296 13442608 ~ 13442722 (+) True XLOC_021525

Expression Profile

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