RNA id: TCONS_00042725


Basic Information

Item Value
RNA id TCONS_00042725
length 1528
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_021500
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10352921 ~ 10355552 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGTCTACTATATGTGAACCTTAAAACTATAAAAATCTCACATCTCTCAGAACCAGCGATTGCATCTGATCTCCTTTCCATTGAAAATCCATCCTTAGCAAAAATGCAAAGCTTTAGTGCCAACAAAAGAACATACAGAATGTCTTCAGAGGATCTCGGTGGGCTTCGACCAACATTTTACTCATGGAGAAGTGCTGGAAATAGGGGCTCCTTTTCCAAAGATATCTTTGGATCTACCAATGTACAAACGGGGGTTGTTGGAAACGTTGGAAATGAAAAGGTAACCATGCAAATTCTAAATGAGCGCCTTGCTTCCTACCTGGAGAAAGTTAGGATTTTGGAGAAGGCCAATGGTGACCTAGAAGTGAAAATCCGCCAGGTTATGGAGAAAAAAGGTCCAGACACAACAGACTACAGTCACTTCCAAGTCACTCTTGATAAACTACGCAAAGAGATCTTGGAGATGATTATgagaaatgtaaatgttaatcTTCAAATTGACAATGCCAAGTTGGCTGCTGAAGACTTCAAGATCAAgtTTGAAAATGAATTTCAGCAAAGACAGTGTGTTGAGGCAGACATAAATGCACTGAGAAAAATGCTGGATGACACCAATGTGGCACGACTCCATCTGGAAAATGATGTTGAAGGATTAAAGGTAGAGCTCATCGAGATCAAGAAACAGCATCAACTGGAATTGTCAGCACTAAATGGTCAAATTACCCAATCAGGAGTGCAAGTGGACATAAATGCCCCTAAGGGACAGGACCTGGCTAAGATAATGGAGGAGATGAGAGCAAACTATGAAAAGATTGTGCTGAAAAACCAAGAAGAGCTCAAAGCCTGGCATGAATCAAAAATATCTGTGGTGCAGGTTCAAGTGACAGAAAACACTGCAGCATTGAAGGAGGCCAGCACACAACTCAGCGTGAGCCGCAGGCGGATGCAGACTTTAGAAACTGACCTGCAGACTCTGACTGGAAGTAGAGCATCTCTGGAAGAAGCCCTTAATGAAACAAAGTTGAGATATGGCATGCAGGTGGAGCAATTCAATAACATCATTTTGTTGCGAGAATCTGAGCTTAAACAGCTGCGTGATGACATACAGAGGCAGTCATTAGACTATCAGGTCTTATTTAACATCAAGATGGAACTGGAAGCTGAGATAGCCACCTACAAGAGACTTCTGGATGGAGAAGAAACactCCAGAACAGGTCCGTGTCGGAGACTGTCACCCGGACGACGATGGAAACGAAAATATTGTCCTGAAAAATTGATTTGATGAAAAATTTTTGGTGTTATCAAAGATAACACAAAAGAAATATCTCAGTtgaaatgtacactgtaaaaaaagcagttattttaattttttttggcagctggggtgccaaaaaaaagtaaaataatgaccattaaattacagaaatttactgtaaaataagacgttaaattacagaagtttacagaaaatctttatttaaggaaataaaaaaagagtacaCTGTACAACCATTGTCAAATACAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-205 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

Ensembl:

ensembl_id ENSDART00000081193

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042721 lncRNA upstream 196393 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044783 lncRNA upstream 400095 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA upstream 400095 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA upstream 400095 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00044658 lncRNA upstream 486983 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00042733 lncRNA downstream 458478 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00044786 lncRNA downstream 868572 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042736 lncRNA downstream 991884 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00042740 lncRNA downstream 1493196 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 1851879 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00042722 mRNA upstream 1167 10347851 ~ 10351754 (+) False XLOC_021499
TCONS_00042719 mRNA upstream 187888 10146542 ~ 10165033 (+) False XLOC_021498
TCONS_00042718 mRNA upstream 463591 9867483 ~ 9889330 (+) True XLOC_021496
TCONS_00042714 mRNA upstream 785727 9561016 ~ 9567194 (+) False XLOC_021492
TCONS_00042713 mRNA upstream 785802 9561010 ~ 9567119 (+) False XLOC_021492
TCONS_00042726 mRNA downstream 41290 10396842 ~ 10453077 (+) False XLOC_021501
TCONS_00042727 mRNA downstream 41337 10396889 ~ 10449449 (+) False XLOC_021501
TCONS_00042728 mRNA downstream 70667 10426219 ~ 10449005 (+) False XLOC_021501
TCONS_00042729 mRNA downstream 76224 10431776 ~ 10448688 (+) True XLOC_021501
TCONS_00042730 mRNA downstream 114403 10469955 ~ 10587257 (+) True XLOC_021502
TCONS_00042724 other upstream 1348 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 2492 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 194020 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 625489 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042716 other upstream 734586 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042731 other downstream 245772 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042741 other downstream 1580032 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 1728005 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 1779287 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 1858415 12213967 ~ 12218375 (+) True XLOC_021513

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU133193 True 1740 lncRNA 0.40 6 CI01000021 3320597 ~ 3323372 (+)