Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042728 |
| length | 1100 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_021501 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 10396842 ~ 10453077 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0002181 | cytoplasmic translation | biological_process |
| GO:0097010 | eukaryotic translation initiation factor 4F complex assembly | biological_process |
| GO:0043024 | ribosomal small subunit binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0034057 | RNA strand-exchange activity | molecular_function |
| GO:0033592 | RNA strand annealing activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060629-1 | Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B). |
| ensembl_id | ENSDART00000139100 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042721 | lncRNA | upstream | 269691 | 10146614 ~ 10156528 (+) | True | XLOC_021498 |
| TCONS_00044783 | lncRNA | upstream | 473393 | 9938245 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044785 | lncRNA | upstream | 473393 | 9938274 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044784 | lncRNA | upstream | 473393 | 9938274 ~ 9952826 (+) | True | XLOC_021497 |
| TCONS_00044658 | lncRNA | upstream | 560281 | 9865701 ~ 9865938 (+) | True | XLOC_021495 |
| TCONS_00042733 | lncRNA | downstream | 365025 | 10814030 ~ 10814497 (+) | True | XLOC_021504 |
| TCONS_00044786 | lncRNA | downstream | 775119 | 11224124 ~ 11224605 (+) | True | XLOC_021505 |
| TCONS_00042736 | lncRNA | downstream | 898431 | 11347436 ~ 11374684 (+) | False | XLOC_021506 |
| TCONS_00042740 | lncRNA | downstream | 1399743 | 11848748 ~ 11851894 (+) | True | XLOC_021507 |
| TCONS_00044787 | lncRNA | downstream | 1758426 | 12207431 ~ 12207959 (+) | False | XLOC_021513 |
| TCONS_00042725 | mRNA | upstream | 70667 | 10352921 ~ 10355552 (+) | True | XLOC_021500 |
| TCONS_00042722 | mRNA | upstream | 74465 | 10347851 ~ 10351754 (+) | False | XLOC_021499 |
| TCONS_00042719 | mRNA | upstream | 261186 | 10146542 ~ 10165033 (+) | False | XLOC_021498 |
| TCONS_00042718 | mRNA | upstream | 536889 | 9867483 ~ 9889330 (+) | True | XLOC_021496 |
| TCONS_00042715 | mRNA | upstream | 860190 | 9561017 ~ 9566029 (+) | True | XLOC_021492 |
| TCONS_00042730 | mRNA | downstream | 20950 | 10469955 ~ 10587257 (+) | True | XLOC_021502 |
| TCONS_00042732 | mRNA | downstream | 356183 | 10805188 ~ 10827419 (+) | False | XLOC_021504 |
| TCONS_00042734 | mRNA | downstream | 836657 | 11285662 ~ 11452312 (+) | False | XLOC_021506 |
| TCONS_00042735 | mRNA | downstream | 898308 | 11347313 ~ 11448747 (+) | False | XLOC_021506 |
| TCONS_00042737 | mRNA | downstream | 925163 | 11374168 ~ 11448740 (+) | True | XLOC_021506 |
| TCONS_00042724 | other | upstream | 74646 | 10350891 ~ 10351573 (+) | True | XLOC_021499 |
| TCONS_00042723 | other | upstream | 75790 | 10347877 ~ 10350429 (+) | False | XLOC_021499 |
| TCONS_00042720 | other | upstream | 267318 | 10146552 ~ 10158901 (+) | False | XLOC_021498 |
| TCONS_00042717 | other | upstream | 698787 | 9727410 ~ 9727432 (+) | True | XLOC_021494 |
| TCONS_00042716 | other | upstream | 807884 | 9618213 ~ 9618335 (+) | True | XLOC_021493 |
| TCONS_00042731 | other | downstream | 152319 | 10601324 ~ 10606546 (+) | True | XLOC_021503 |
| TCONS_00042741 | other | downstream | 1486579 | 11935584 ~ 11935700 (+) | True | XLOC_021508 |
| TCONS_00042743 | other | downstream | 1634552 | 12083557 ~ 12083671 (+) | True | XLOC_021510 |
| TCONS_00042745 | other | downstream | 1685834 | 12134839 ~ 12150667 (+) | False | XLOC_021511 |
| TCONS_00042749 | other | downstream | 1764962 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
