Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042713 |
| length | 1296 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 10 |
| gene id | XLOC_021492 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 9560797 ~ 9567306 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0043248 | proteasome assembly | biological_process |
| GO:0008541 | proteasome regulatory particle, lid subcomplex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0061133 | endopeptidase activator activity | molecular_function |
| GO:0070628 | proteasome binding | molecular_function |
| GO:0043130 | ubiquitin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-905 | Predicted to enable endopeptidase activator activity; proteasome binding activity; and ubiquitin binding activity. Predicted to be involved in proteasome assembly and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human ADRM1 (ADRM1 26S proteasome ubiquitin receptor). |
| ensembl_id | ENSDART00000131594 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044782 | lncRNA | upstream | 157393 | 9396668 ~ 9403617 (+) | True | XLOC_021490 |
| TCONS_00044657 | lncRNA | upstream | 749356 | 8809359 ~ 8811654 (+) | True | XLOC_021479 |
| TCONS_00044781 | lncRNA | upstream | 749433 | 8787995 ~ 8811577 (+) | False | XLOC_021479 |
| TCONS_00042690 | lncRNA | upstream | 861017 | 8687571 ~ 8699993 (+) | True | XLOC_021478 |
| TCONS_00042680 | lncRNA | upstream | 2152563 | 7405546 ~ 7408447 (+) | True | XLOC_021472 |
| TCONS_00044658 | lncRNA | downstream | 298582 | 9865701 ~ 9865938 (+) | True | XLOC_021495 |
| TCONS_00044783 | lncRNA | downstream | 371126 | 9938245 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044785 | lncRNA | downstream | 371155 | 9938274 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044784 | lncRNA | downstream | 371155 | 9938274 ~ 9952826 (+) | True | XLOC_021497 |
| TCONS_00042721 | lncRNA | downstream | 579495 | 10146614 ~ 10156528 (+) | True | XLOC_021498 |
| TCONS_00042708 | mRNA | upstream | 9043 | 9508538 ~ 9551967 (+) | False | XLOC_021491 |
| TCONS_00042710 | mRNA | upstream | 25329 | 9522942 ~ 9535681 (+) | True | XLOC_021491 |
| TCONS_00042709 | mRNA | upstream | 27767 | 9522781 ~ 9533243 (+) | False | XLOC_021491 |
| TCONS_00042707 | mRNA | upstream | 203383 | 9353552 ~ 9357627 (+) | True | XLOC_021489 |
| TCONS_00042705 | mRNA | upstream | 272565 | 9268083 ~ 9288445 (+) | True | XLOC_021487 |
| TCONS_00042718 | mRNA | downstream | 300364 | 9867483 ~ 9889330 (+) | True | XLOC_021496 |
| TCONS_00042719 | mRNA | downstream | 579423 | 10146542 ~ 10165033 (+) | False | XLOC_021498 |
| TCONS_00042722 | mRNA | downstream | 780732 | 10347851 ~ 10351754 (+) | False | XLOC_021499 |
| TCONS_00042725 | mRNA | downstream | 785802 | 10352921 ~ 10355552 (+) | True | XLOC_021500 |
| TCONS_00042726 | mRNA | downstream | 829723 | 10396842 ~ 10453077 (+) | False | XLOC_021501 |
| TCONS_00042706 | other | upstream | 252449 | 9307574 ~ 9308561 (+) | True | XLOC_021488 |
| TCONS_00042675 | other | upstream | 2735208 | 6825688 ~ 6825802 (+) | True | XLOC_021466 |
| TCONS_00042666 | other | upstream | 3256736 | 6277175 ~ 6304274 (+) | True | XLOC_021459 |
| TCONS_00042596 | other | upstream | 5826001 | 3721041 ~ 3735009 (+) | False | XLOC_021425 |
| TCONS_00042520 | other | upstream | 9118658 | 442237 ~ 442352 (+) | True | XLOC_021384 |
| TCONS_00042716 | other | downstream | 51094 | 9618213 ~ 9618335 (+) | True | XLOC_021493 |
| TCONS_00042717 | other | downstream | 160291 | 9727410 ~ 9727432 (+) | True | XLOC_021494 |
| TCONS_00042720 | other | downstream | 579433 | 10146552 ~ 10158901 (+) | False | XLOC_021498 |
| TCONS_00042723 | other | downstream | 780758 | 10347877 ~ 10350429 (+) | False | XLOC_021499 |
| TCONS_00042724 | other | downstream | 783772 | 10350891 ~ 10351573 (+) | True | XLOC_021499 |
